Zinc in PDB 2nxf: Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393

The structure of Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393, PDB code: 2nxf was solved by E.Bitto, G.E.Wesenberg, G.N.Phillips Jr., J.G.Mccoy, C.A.Bingman, Centerfor Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.28 / 1.70
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	62.584, 86.593, 157.315, 90.00, 90.00, 90.00
R / Rfree (%)	16.1 / 18

The binding sites of Zinc atom in the Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393 (pdb code 2nxf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393, PDB code: 2nxf:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:16.9 occ:0.80 OE1 A:GLN15 2.0 27.5 1.0 OD1 A:ASP13 2.1 27.3 1.0 O A:HOH844 2.1 20.1 1.0 O3 A:PO4501 2.2 17.0 0.8 OD2 A:ASP60 2.2 22.9 1.0 NE2 A:HIS267 2.2 25.8 1.0 CD A:GLN15 3.1 25.3 1.0 CE1 A:HIS267 3.1 25.6 1.0 CG A:ASP13 3.1 27.6 1.0 CG A:ASP60 3.2 24.8 1.0 ZN A:ZN402 3.3 14.8 0.8 P A:PO4501 3.3 20.2 0.8 CD2 A:HIS267 3.3 27.6 1.0 CB A:ASP60 3.5 23.6 1.0 O4 A:PO4501 3.5 18.5 0.8 CB A:ASP13 3.7 24.9 1.0 NE2 A:GLN15 3.7 28.4 1.0 O1 A:PO4501 3.9 23.4 0.8 OD2 A:ASP13 4.2 27.1 1.0 ND1 A:HIS267 4.3 27.1 1.0 CG A:GLN15 4.3 27.7 1.0 O A:HIS265 4.3 26.9 1.0 OD1 A:ASP60 4.3 24.4 1.0 CD2 A:HIS97 4.4 24.5 1.0 CG A:HIS267 4.4 26.2 1.0 O2 A:PO4501 4.5 19.6 0.8 CA A:ASP13 4.5 23.8 1.0 NE2 A:HIS228 4.5 25.8 1.0 CE1 A:HIS228 4.6 27.1 1.0 CA A:HIS265 4.6 25.8 1.0 NE2 A:HIS97 4.7 23.9 1.0 CG2 A:ILE287 4.9 25.7 1.0 C A:HIS265 4.9 25.8 1.0 ND1 A:HIS265 5.0 24.2 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:14.8 occ:0.80 OD1 A:ASN96 2.1 22.4 1.0 O A:HOH844 2.2 20.1 1.0 OD2 A:ASP60 2.2 22.9 1.0 NE2 A:HIS228 2.2 25.8 1.0 ND1 A:HIS265 2.2 24.2 1.0 O4 A:PO4501 2.5 18.5 0.8 CE1 A:HIS265 3.0 26.4 1.0 CG A:ASP60 3.1 24.8 1.0 CE1 A:HIS228 3.2 27.1 1.0 CG A:ASN96 3.2 23.1 1.0 CD2 A:HIS228 3.2 25.5 1.0 ZN A:ZN401 3.3 16.9 0.8 OD1 A:ASP60 3.3 24.4 1.0 CG A:HIS265 3.4 26.1 1.0 ND2 A:ASN96 3.6 22.2 1.0 P A:PO4501 3.7 20.2 0.8 OD1 A:ASP13 3.8 27.3 1.0 CA A:HIS265 3.8 25.8 1.0 O3 A:PO4501 3.9 17.0 0.8 CB A:HIS265 3.9 25.6 1.0 NE2 A:HIS265 4.2 25.1 1.0 ND1 A:HIS228 4.3 24.1 1.0 CG A:HIS228 4.3 23.9 1.0 O1 A:PO4501 4.4 23.4 0.8 N A:ASN96 4.4 23.1 1.0 CB A:ASP60 4.4 23.6 1.0 CD2 A:HIS265 4.4 25.2 1.0 O A:HIS265 4.4 26.9 1.0 CD2 A:HIS97 4.4 24.5 1.0 CB A:ASN96 4.5 22.6 1.0 OH A:TYR150 4.6 25.3 1.0 C A:HIS265 4.7 25.8 1.0 N A:HIS265 4.7 25.5 1.0 O A:HOH690 4.9 38.5 1.0 OE1 A:GLN15 4.9 27.5 1.0 O2 A:PO4501 4.9 19.6 0.8 CG A:ASP13 5.0 27.6 1.0 CA A:ASN96 5.0 23.0 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn403 b:21.6 occ:0.20 NE2 A:HIS174 2.1 29.2 1.0 O A:HOH694 2.1 44.9 1.0 CE1 A:HIS174 3.1 28.9 1.0 CD2 A:HIS174 3.1 28.1 1.0 ND1 A:HIS174 4.2 27.1 1.0 CG A:HIS174 4.2 26.4 1.0 CG2 A:ILE170 4.5 28.9 1.0 CZ A:PHE194 4.6 25.1 1.0 O A:HOH724 4.6 29.9 1.0 CE1 A:PHE194 4.8 26.0 1.0 O A:HOH685 4.9 39.5 1.0 O A:ILE170 5.0 25.6 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn404 b:18.7 occ:0.10 O A:HOH628 1.7 22.3 0.5 NE2 A:HIS166 2.1 33.7 1.0 O A:HOH646 2.5 39.9 1.0 CE1 A:HIS166 2.8 33.6 1.0 CD1 A:ILE170 3.1 28.6 1.0 CD2 A:HIS166 3.3 32.0 1.0 ND1 A:HIS166 4.0 33.0 1.0 CG1 A:ILE170 4.0 28.2 1.0 CD1 A:LEU152 4.1 28.9 1.0 CG A:HIS166 4.3 28.5 1.0 O A:HOH759 4.3 38.6 1.0 O A:HOH526 4.4 21.8 1.0 O A:HOH681 4.8 18.7 1.0

E.Bitto, G.E.Wesenberg, G.N.Phillips Jr., J.G.Mccoy, C.A.Bingman. Crystal Structure of A Dimetal Phosphatase From Danio Rerio Loc 393393 To Be Published.