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Zinc in PDB 2nx8: The Crystal Structure of the Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes

Protein crystallography data

The structure of The Crystal Structure of the Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes, PDB code: 2nx8 was solved by K.Y.Hwang, W.-H.Lee, Y.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.66 / 2.00
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.091, 80.091, 81.104, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 24.2

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of the Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes (pdb code 2nx8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of the Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes, PDB code: 2nx8:

Zinc binding site 1 out of 1 in 2nx8

Go back to Zinc Binding Sites List in 2nx8
Zinc binding site 1 out of 1 in the The Crystal Structure of the Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of the Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn999

b:39.1
occ:1.00
ND1 A:HIS65 2.2 18.8 1.0
SG A:CYS95 2.3 23.4 1.0
SG A:CYS98 2.3 20.6 1.0
CE1 A:HIS65 3.1 20.2 1.0
CG A:HIS65 3.2 17.9 1.0
CB A:CYS98 3.3 21.3 1.0
CB A:CYS95 3.5 23.6 1.0
CB A:HIS65 3.5 19.9 1.0
CE A:MET97 3.8 19.2 1.0
N A:CYS98 3.8 22.7 1.0
N A:CYS95 3.9 24.2 1.0
OE1 A:GLU67 4.0 23.3 1.0
O A:HOH2058 4.1 38.5 1.0
CA A:CYS98 4.2 21.3 1.0
CA A:CYS95 4.2 23.8 1.0
NE2 A:HIS65 4.2 20.4 1.0
OE2 A:GLU67 4.3 17.9 1.0
CD2 A:HIS65 4.3 18.6 1.0
O A:HOH2085 4.3 31.2 1.0
CD A:GLU67 4.3 20.9 1.0
C A:CYS95 4.7 23.9 1.0
CB A:MET97 4.7 20.7 1.0
O A:CYS95 4.9 23.5 1.0
C A:MET97 4.9 22.1 1.0

Reference:

W.-H.Lee, Y.K.Kim, K.H.Nam, A.Priyadarshi, E.H.Lee, E.E.Kim, Y.H.Jeon, C.Cheong, K.Y.Hwang. Crystal Structure of the Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Proteins V. 68 1016 2007.
ISSN: ISSN 0887-3585
PubMed: 17554781
DOI: 10.1002/PROT.21456
Page generated: Wed Dec 16 03:44:45 2020

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