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Zinc in PDB 2nwj: Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution

Protein crystallography data

The structure of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution, PDB code: 2nwj was solved by N.Singh, S.Sharma, M.Perbandt, P.Kaur, C.Betzel, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.82 / 2.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.960, 49.840, 64.810, 90.00, 106.59, 90.00
R / Rfree (%) 20.7 / 22.7

Other elements in 2nwj:

The structure of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution (pdb code 2nwj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution, PDB code: 2nwj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2nwj

Go back to Zinc Binding Sites List in 2nwj
Zinc binding site 1 out of 2 in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:27.9
occ:1.00
O A:HOH2219 2.1 62.5 1.0
OE2 A:GLU659 2.2 25.6 1.0
OE1 A:GLU659 2.2 23.4 1.0
CD A:GLU659 2.5 25.0 1.0
O A:GLY653 3.9 33.6 1.0
CG A:GLU659 4.0 24.6 1.0
O A:HOH2105 4.3 41.0 1.0
O A:ARG654 4.3 28.1 1.0
O A:HOH2223 4.7 47.2 1.0
CB A:GLU659 4.8 24.7 1.0
N A:THR656 4.9 23.2 1.0
CG2 A:THR656 5.0 22.1 1.0
CA A:PRO655 5.0 25.9 1.0

Zinc binding site 2 out of 2 in 2nwj

Go back to Zinc Binding Sites List in 2nwj
Zinc binding site 2 out of 2 in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1102

b:35.1
occ:1.00
O A:HOH2324 1.8 26.2 1.0
O A:HOH2363 1.9 45.2 1.0
NE2 A:HIS588 2.1 29.2 1.0
O A:HOH2373 2.1 42.3 1.0
O A:HOH2251 2.4 37.5 1.0
CE1 A:HIS588 3.0 28.5 1.0
CD2 A:HIS588 3.1 28.8 1.0
O A:HOH2198 4.1 52.7 1.0
CG2 A:VAL591 4.1 29.0 1.0
ND1 A:HIS588 4.2 29.3 1.0
CG A:HIS588 4.2 28.7 1.0
O A:HOH2326 4.4 72.9 1.0
O A:HOH2053 4.7 38.0 1.0
O A:HOH2056 4.8 31.8 1.0

Reference:

N.Singh, S.Sharma, M.Perbandt, P.Kaur, C.Betzel, T.P.Singh. Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Disaccharide at 1.75 A Resolution To Be Published.
Page generated: Wed Dec 16 03:44:36 2020

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