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Zinc in PDB 2n26: Solution Structure of Miz-1 Zinc Fingers 3 and 4

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Miz-1 Zinc Fingers 3 and 4 (pdb code 2n26). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Miz-1 Zinc Fingers 3 and 4, PDB code: 2n26:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2n26

Go back to Zinc Binding Sites List in 2n26
Zinc binding site 1 out of 2 in the Solution Structure of Miz-1 Zinc Fingers 3 and 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Miz-1 Zinc Fingers 3 and 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.9
occ:1.00
OE1 A:GLU64 1.9 1.4 1.0
NE2 A:HIS78 2.1 0.7 1.0
NE2 A:HIS82 2.1 0.9 1.0
SG A:CYS65 2.3 1.0 1.0
SG A:CYS62 2.3 1.1 1.0
CD2 A:HIS82 2.7 0.8 1.0
CE1 A:HIS82 2.9 1.0 1.0
CD2 A:HIS78 2.9 0.6 1.0
HD2 A:HIS82 3.0 0.8 1.0
HD2 A:HIS78 3.1 0.7 1.0
CD A:GLU64 3.2 1.4 1.0
CE1 A:HIS78 3.2 0.7 1.0
HE1 A:HIS82 3.4 1.2 1.0
CB A:CYS62 3.4 1.0 1.0
HB2 A:CYS62 3.4 0.9 1.0
HB3 A:CYS62 3.5 1.1 1.0
HE1 A:HIS78 3.6 0.8 1.0
HB3 A:CYS65 3.6 1.2 1.0
HG2 A:GLU64 3.6 2.1 1.0
CB A:CYS65 3.6 1.1 1.0
CG A:HIS82 3.6 0.9 1.0
HB3 A:GLU64 3.7 1.9 1.0
ND1 A:HIS82 3.7 1.0 1.0
H A:CYS65 3.8 1.3 1.0
CG A:GLU64 3.9 1.6 1.0
HD3 A:LYS79 3.9 2.2 1.0
CG A:HIS78 4.1 0.5 1.0
OE2 A:GLU64 4.1 1.8 1.0
ND1 A:HIS78 4.2 0.6 1.0
N A:CYS65 4.2 1.3 1.0
HE2 A:LYS79 4.3 1.5 1.0
CB A:GLU64 4.3 1.6 1.0
HB2 A:CYS65 4.3 1.1 1.0
HA A:LYS79 4.4 0.7 1.0
HD1 A:HIS82 4.6 1.1 1.0
CA A:CYS65 4.6 1.3 1.0
O A:HIS78 4.7 0.5 1.0
H A:GLU64 4.7 1.5 1.0
H A:GLY66 4.7 1.3 1.0
HB2 A:HIS82 4.8 0.8 1.0
CA A:CYS62 4.8 1.1 1.0
CD A:LYS79 4.8 1.7 1.0
HG3 A:GLU64 4.9 2.0 1.0
CB A:HIS82 4.9 0.8 1.0
HB2 A:LYS67 4.9 1.1 1.0
H A:LYS67 5.0 1.1 1.0
C A:GLU64 5.0 1.5 1.0

Zinc binding site 2 out of 2 in 2n26

Go back to Zinc Binding Sites List in 2n26
Zinc binding site 2 out of 2 in the Solution Structure of Miz-1 Zinc Fingers 3 and 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Miz-1 Zinc Fingers 3 and 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:1.0
occ:1.00
NE2 A:HIS110 2.0 1.1 1.0
NE2 A:HIS106 2.1 0.9 1.0
SG A:CYS90 2.3 0.9 1.0
SG A:CYS93 2.3 1.0 1.0
OD1 A:ASP92 2.6 1.6 1.0
CD2 A:HIS106 2.7 0.8 1.0
HD2 A:HIS106 2.7 0.7 1.0
CD2 A:HIS110 2.9 1.0 1.0
CE1 A:HIS110 2.9 1.1 1.0
HD2 A:HIS110 3.2 1.0 1.0
HB3 A:CYS90 3.2 0.9 1.0
HE1 A:HIS110 3.2 1.2 1.0
CE1 A:HIS106 3.2 1.0 1.0
CB A:CYS90 3.3 0.8 1.0
HB3 A:CYS93 3.3 1.1 1.0
HB2 A:CYS90 3.4 0.7 1.0
CB A:CYS93 3.5 1.1 1.0
H A:CYS93 3.7 1.0 1.0
CG A:ASP92 3.7 1.5 1.0
HG3 A:LYS95 3.7 1.0 1.0
HE1 A:HIS106 3.8 1.1 1.0
CG A:HIS106 3.8 0.8 1.0
O A:HIS106 3.9 0.8 1.0
HD2 A:LYS95 4.0 1.2 1.0
CG A:HIS110 4.0 1.1 1.0
ND1 A:HIS110 4.0 1.2 1.0
OD2 A:ASP92 4.0 2.1 1.0
ND1 A:HIS106 4.1 0.9 1.0
HB2 A:LYS95 4.2 0.9 1.0
HB2 A:CYS93 4.2 1.2 1.0
N A:CYS93 4.2 1.1 1.0
HZ3 A:LYS95 4.3 2.3 1.0
CA A:CYS93 4.4 1.1 1.0
H A:LYS95 4.4 0.9 1.0
CG A:LYS95 4.6 0.9 1.0
H A:GLY94 4.6 1.0 1.0
HA A:GLN107 4.6 0.7 1.0
HE1 A:PHE97 4.7 0.6 1.0
HZ1 A:LYS95 4.7 2.4 1.0
CA A:CYS90 4.7 0.7 1.0
H A:ASP92 4.8 0.9 1.0
CD A:LYS95 4.8 1.1 1.0
C A:HIS106 4.8 0.7 1.0
HE21 A:GLN107 4.8 1.4 1.0
HG23 A:VAL109 4.8 1.4 1.0
HD1 A:HIS110 4.9 1.3 1.0
CB A:LYS95 4.9 0.9 1.0
HG22 A:VAL109 4.9 1.4 1.0
NZ A:LYS95 5.0 2.0 1.0
CB A:ASP92 5.0 1.1 1.0

Reference:

C.Tremblay, M.Bedard, M.A.Bonin, P.Lavigne. Solution Structure of the 13TH C2H2 Zinc Finger of Miz-1. Biochem.Biophys.Res.Commun. V. 473 471 2016.
ISSN: ISSN 0006-291X
PubMed: 26972249
DOI: 10.1016/J.BBRC.2016.03.034
Page generated: Wed Dec 16 03:41:50 2020

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