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Zinc in PDB 2mq1: Phosphotyrosine Binding Domain

Zinc Binding Sites:

The binding sites of Zinc atom in the Phosphotyrosine Binding Domain (pdb code 2mq1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Phosphotyrosine Binding Domain, PDB code: 2mq1:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2mq1

Go back to Zinc Binding Sites List in 2mq1
Zinc binding site 1 out of 3 in the Phosphotyrosine Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Phosphotyrosine Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
SG A:CYS25 2.3 0.0 1.0
SG A:CYS7 2.3 0.0 1.0
SG A:CYS28 2.4 0.0 1.0
SG A:CYS4 2.5 0.0 1.0
HB2 A:CYS7 3.0 0.0 1.0
HB3 A:CYS4 3.2 0.0 1.0
CB A:CYS25 3.2 0.0 1.0
HB3 A:CYS25 3.2 0.0 1.0
CB A:CYS7 3.2 0.0 1.0
HB2 A:LEU9 3.3 0.0 1.0
CB A:CYS4 3.3 0.0 1.0
HB2 A:CYS25 3.4 0.0 1.0
HB2 A:CYS4 3.4 0.0 1.0
HB2 A:CYS28 3.5 0.0 1.0
CB A:CYS28 3.6 0.0 1.0
HB3 A:CYS7 3.6 0.0 1.0
H A:LEU9 4.1 0.0 1.0
HB3 A:CYS28 4.1 0.0 1.0
H A:CYS28 4.1 0.0 1.0
CB A:LEU9 4.2 0.0 1.0
HB3 A:LEU9 4.2 0.0 1.0
H A:CYS7 4.3 0.0 1.0
H A:CYS25 4.3 0.0 1.0
CA A:CYS7 4.5 0.0 1.0
CA A:CYS25 4.6 0.0 1.0
HD22 A:LEU9 4.6 0.0 1.0
CA A:CYS4 4.7 0.0 1.0
N A:CYS7 4.8 0.0 1.0
HG12 A:ILE11 4.8 0.0 1.0
N A:LEU9 4.8 0.0 1.0
N A:CYS28 4.8 0.0 1.0
O A:LEU9 4.8 0.0 1.0
CA A:CYS28 4.8 0.0 1.0
N A:CYS25 4.8 0.0 1.0
H A:CYS4 4.8 0.0 1.0
HB3 A:ASP27 4.9 0.0 1.0
HD3 A:LYS6 4.9 0.0 1.0
HA A:ILE11 4.9 0.0 1.0
H A:GLY8 4.9 0.0 1.0
CA A:LEU9 5.0 0.0 1.0
HD21 A:LEU9 5.0 0.0 1.0

Zinc binding site 2 out of 3 in 2mq1

Go back to Zinc Binding Sites List in 2mq1
Zinc binding site 2 out of 3 in the Phosphotyrosine Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Phosphotyrosine Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:0.0
occ:1.00
ND1 A:HIS22 2.1 0.0 1.0
HB2 A:HIS22 2.2 0.0 1.0
SG A:CYS43 2.3 0.0 1.0
SG A:CYS20 2.4 0.0 1.0
SG A:CYS40 2.4 0.0 1.0
CG A:HIS22 2.6 0.0 1.0
CB A:HIS22 2.7 0.0 1.0
HB3 A:HIS22 3.0 0.0 1.0
HB3 A:CYS20 3.0 0.0 1.0
CE1 A:HIS22 3.1 0.0 1.0
HE1 A:PHE24 3.2 0.0 1.0
HB2 A:CYS43 3.2 0.0 1.0
CB A:CYS20 3.2 0.0 1.0
HZ A:PHE24 3.3 0.0 1.0
CB A:CYS43 3.3 0.0 1.0
CB A:CYS40 3.5 0.0 1.0
HB2 A:CYS20 3.6 0.0 1.0
HB2 A:CYS40 3.6 0.0 1.0
HE1 A:HIS22 3.7 0.0 1.0
CD2 A:HIS22 3.7 0.0 1.0
HB3 A:CYS40 3.7 0.0 1.0
HB3 A:CYS43 3.8 0.0 1.0
CE1 A:PHE24 3.9 0.0 1.0
H A:CYS43 4.0 0.0 1.0
NE2 A:HIS22 4.0 0.0 1.0
CZ A:PHE24 4.0 0.0 1.0
H A:HIS22 4.1 0.0 1.0
CA A:HIS22 4.1 0.0 1.0
HB2 A:ASP45 4.2 0.0 1.0
HB2 A:MET17 4.3 0.0 1.0
N A:HIS22 4.5 0.0 1.0
HD2 A:HIS22 4.5 0.0 1.0
CA A:CYS43 4.6 0.0 1.0
CA A:CYS20 4.6 0.0 1.0
N A:CYS43 4.6 0.0 1.0
HA A:HIS22 4.7 0.0 1.0
HD2 A:PRO41 4.8 0.0 1.0
HE2 A:HIS22 4.9 0.0 1.0
SD A:MET17 4.9 0.0 1.0
CA A:CYS40 4.9 0.0 1.0
C A:CYS20 4.9 0.0 1.0
HA A:CYS20 4.9 0.0 1.0
H A:ASP45 4.9 0.0 1.0
C A:HIS22 5.0 0.0 1.0

Zinc binding site 3 out of 3 in 2mq1

Go back to Zinc Binding Sites List in 2mq1
Zinc binding site 3 out of 3 in the Phosphotyrosine Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Phosphotyrosine Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn103

b:0.0
occ:1.00
NE2 A:HIS80 2.0 0.0 1.0
NE2 A:HIS85 2.1 0.0 1.0
HE1 A:HIS85 2.3 0.0 1.0
SG A:CYS61 2.4 0.0 1.0
CE1 A:HIS85 2.4 0.0 1.0
SG A:CYS67 2.4 0.0 1.0
HD2 A:HIS80 2.5 0.0 1.0
CD2 A:HIS80 2.5 0.0 1.0
HB3 A:CYS67 3.0 0.0 1.0
CD2 A:HIS85 3.2 0.0 1.0
CB A:CYS67 3.3 0.0 1.0
CE1 A:HIS80 3.3 0.0 1.0
HD12 A:ILE81 3.4 0.0 1.0
ND1 A:HIS85 3.5 0.0 1.0
CB A:CYS61 3.5 0.0 1.0
HG13 A:ILE63 3.5 0.0 1.0
HB3 A:CYS61 3.6 0.0 1.0
HB A:ILE63 3.8 0.0 1.0
HB2 A:CYS67 3.8 0.0 1.0
HE1 A:HIS80 3.8 0.0 1.0
HB2 A:CYS61 3.8 0.0 1.0
HD2 A:HIS85 3.8 0.0 1.0
CG A:HIS80 3.8 0.0 1.0
CG A:HIS85 3.9 0.0 1.0
HB2 A:ARG69 4.1 0.0 1.0
ND1 A:HIS80 4.2 0.0 1.0
H A:ILE63 4.2 0.0 1.0
HD1 A:HIS85 4.2 0.0 1.0
HA A:ILE81 4.2 0.0 1.0
CG1 A:ILE63 4.3 0.0 1.0
HG12 A:ILE63 4.3 0.0 1.0
CD1 A:ILE81 4.3 0.0 1.0
O A:CYS67 4.4 0.0 1.0
H A:ARG69 4.4 0.0 1.0
HD11 A:ILE81 4.5 0.0 1.0
CA A:CYS67 4.5 0.0 1.0
CB A:ILE63 4.5 0.0 1.0
HD13 A:ILE81 4.6 0.0 1.0
C A:CYS67 4.7 0.0 1.0
HB2 A:ARG84 4.7 0.0 1.0
HG3 A:ARG69 4.8 0.0 1.0
HA A:CYS67 4.9 0.0 1.0
CA A:CYS61 4.9 0.0 1.0
H A:VAL64 4.9 0.0 1.0
HG22 A:ILE81 5.0 0.0 1.0
N A:ILE63 5.0 0.0 1.0
C A:CYS61 5.0 0.0 1.0

Reference:

M.Mukherjee, F.Jing-Song, S.Ramachandran, G.R.Guy, J.Sivaraman. Dimeric Switch of Hakai-Truncated Monomers During Substrate Recognition: Insights From Solution Studies and uc(Nmr) Structure J.Biol.Chem. 2014.
ISSN: ESSN 1083-351X
DOI: 10.1074/JBC.M114.592840
Page generated: Wed Dec 16 03:40:48 2020

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