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Zinc in PDB 2mbv: LMO4-LIM2 in Complex with DEAF1 (404-418)

Zinc Binding Sites:

The binding sites of Zinc atom in the LMO4-LIM2 in Complex with DEAF1 (404-418) (pdb code 2mbv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the LMO4-LIM2 in Complex with DEAF1 (404-418), PDB code: 2mbv:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2mbv

Go back to Zinc Binding Sites List in 2mbv
Zinc binding site 1 out of 2 in the LMO4-LIM2 in Complex with DEAF1 (404-418)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of LMO4-LIM2 in Complex with DEAF1 (404-418) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:0.0
occ:1.00
ND1 A:HIS109 2.0 0.0 1.0
SG A:CYS90 2.3 0.0 1.0
SG A:CYS112 2.3 0.0 1.0
SG A:CYS87 2.3 0.0 1.0
HB2 A:HIS109 2.7 0.0 1.0
CE1 A:HIS109 3.0 0.0 1.0
H A:GLY91 3.0 0.0 1.0
CG A:HIS109 3.0 0.0 1.0
H A:CYS90 3.1 0.0 1.0
HB3 A:CYS87 3.1 0.0 1.0
HE1 A:HIS109 3.2 0.0 1.0
HB3 A:CYS90 3.3 0.0 1.0
CB A:CYS90 3.3 0.0 1.0
CB A:CYS87 3.4 0.0 1.0
CB A:CYS112 3.4 0.0 1.0
HB2 A:CYS112 3.4 0.0 1.0
CB A:HIS109 3.4 0.0 1.0
HB3 A:CYS112 3.5 0.0 1.0
H A:HIS109 3.6 0.0 1.0
N A:CYS90 3.7 0.0 1.0
H A:GLN92 3.7 0.0 1.0
N A:GLY91 3.8 0.0 1.0
HB2 A:CYS87 3.9 0.0 1.0
CA A:CYS90 4.0 0.0 1.0
HB3 A:ALA89 4.0 0.0 1.0
HB3 A:HIS109 4.1 0.0 1.0
NE2 A:HIS109 4.1 0.0 1.0
CD2 A:HIS109 4.2 0.0 1.0
HB2 A:CYS90 4.2 0.0 1.0
N A:HIS109 4.3 0.0 1.0
HB1 A:ALA89 4.4 0.0 1.0
C A:CYS90 4.4 0.0 1.0
H A:CYS87 4.5 0.0 1.0
CA A:HIS109 4.5 0.0 1.0
H A:ALA89 4.5 0.0 1.0
N A:GLN92 4.6 0.0 1.0
CB A:ALA89 4.6 0.0 1.0
CA A:CYS87 4.6 0.0 1.0
C A:ALA89 4.7 0.0 1.0
HA2 A:GLY91 4.7 0.0 1.0
H A:CYS112 4.8 0.0 1.0
HE3 A:LYS111 4.8 0.0 1.0
CA A:CYS112 4.8 0.0 1.0
CA A:GLY91 4.8 0.0 1.0
HB2 A:GLN92 5.0 0.0 1.0
HA A:CYS90 5.0 0.0 1.0
HD2 A:LYS111 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2mbv

Go back to Zinc Binding Sites List in 2mbv
Zinc binding site 2 out of 2 in the LMO4-LIM2 in Complex with DEAF1 (404-418)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of LMO4-LIM2 in Complex with DEAF1 (404-418) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:0.0
occ:1.00
OD2 A:ASP140 2.0 0.0 1.0
SG A:CYS118 2.3 0.0 1.0
SG A:CYS137 2.3 0.0 1.0
SG A:CYS115 2.3 0.0 1.0
H A:CYS118 2.7 0.0 1.0
CG A:ASP140 2.9 0.0 1.0
HB3 A:CYS137 3.1 0.0 1.0
HB3 A:ASP140 3.2 0.0 1.0
HB2 A:CYS118 3.2 0.0 1.0
HB2 A:CYS115 3.2 0.0 1.0
H A:ASP140 3.2 0.0 1.0
HB A:THR117 3.3 0.0 1.0
CB A:CYS115 3.3 0.0 1.0
HG1 A:THR117 3.3 0.0 1.0
CB A:CYS118 3.3 0.0 1.0
CB A:CYS137 3.3 0.0 1.0
H A:CYS137 3.4 0.0 1.0
HB3 A:ASN120 3.4 0.0 1.0
N A:CYS118 3.4 0.0 1.0
HB3 A:HIS139 3.5 0.0 1.0
HB3 A:CYS115 3.5 0.0 1.0
CB A:ASP140 3.6 0.0 1.0
H A:ASN120 3.7 0.0 1.0
OD1 A:ASP140 3.8 0.0 1.0
N A:CYS137 3.9 0.0 1.0
N A:ASP140 3.9 0.0 1.0
CA A:CYS118 3.9 0.0 1.0
H A:THR117 4.0 0.0 1.0
OG1 A:THR117 4.1 0.0 1.0
CB A:THR117 4.1 0.0 1.0
CA A:CYS137 4.1 0.0 1.0
H A:ARG119 4.1 0.0 1.0
HB2 A:CYS137 4.2 0.0 1.0
HB3 A:CYS118 4.2 0.0 1.0
HB2 A:ASN120 4.3 0.0 1.0
CB A:ASN120 4.3 0.0 1.0
H A:HIS139 4.3 0.0 1.0
HD21 A:ASN120 4.3 0.0 1.0
CA A:ASP140 4.4 0.0 1.0
C A:THR117 4.4 0.0 1.0
HA A:PHE136 4.4 0.0 1.0
HB2 A:ASP140 4.5 0.0 1.0
CB A:HIS139 4.5 0.0 1.0
C A:CYS118 4.5 0.0 1.0
N A:ARG119 4.6 0.0 1.0
N A:ASN120 4.6 0.0 1.0
CA A:THR117 4.6 0.0 1.0
N A:THR117 4.7 0.0 1.0
C A:CYS137 4.7 0.0 1.0
CA A:CYS115 4.7 0.0 1.0
C A:HIS139 4.8 0.0 1.0
C A:PHE136 4.8 0.0 1.0
HA A:CYS118 4.8 0.0 1.0
HD2 A:HIS139 4.9 0.0 1.0
HB2 A:HIS139 4.9 0.0 1.0
H A:ARG141 4.9 0.0 1.0
HA A:ASP140 4.9 0.0 1.0
N A:HIS139 4.9 0.0 1.0
HB3 A:PHE136 4.9 0.0 1.0
O A:CYS137 5.0 0.0 1.0
CA A:HIS139 5.0 0.0 1.0

Reference:

S.Joseph, A.H.Kwan, P.Foo, L.Cubeddu, J.P.Mackay, J.M.Matthews. Structural Characterisation of Lim-Only Protein 4 (LMO4) in Complex with Deformed Epidermal Autoregulatory Factor-1 (DEAF1) To Be Published.
Page generated: Wed Dec 16 03:40:00 2020

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