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Zinc in PDB 2ma6: Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A (pdb code 2ma6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A, PDB code: 2ma6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ma6

Go back to Zinc Binding Sites List in 2ma6
Zinc binding site 1 out of 2 in the Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
SG A:CYS34 2.3 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
SG A:CYS11 2.4 0.0 1.0
SG A:CYS14 2.4 0.0 1.0
HB A:ILE13 3.0 0.0 1.0
H A:CYS31 3.1 0.0 1.0
HB2 A:CYS14 3.4 0.0 1.0
HB2 A:CYS34 3.4 0.0 1.0
HB2 A:SER30 3.5 0.0 1.0
HB3 A:CYS11 3.5 0.0 1.0
CB A:CYS34 3.5 0.0 1.0
CB A:CYS14 3.6 0.0 1.0
CB A:CYS11 3.6 0.0 1.0
HB3 A:CYS31 3.6 0.0 1.0
CB A:CYS31 3.6 0.0 1.0
HB2 A:CYS11 3.9 0.0 1.0
HD12 A:ILE13 3.9 0.0 1.0
N A:CYS31 3.9 0.0 1.0
H A:CYS34 4.0 0.0 1.0
CB A:ILE13 4.0 0.0 1.0
HA A:CYS34 4.2 0.0 1.0
HB3 A:CYS14 4.2 0.0 1.0
HG21 A:ILE13 4.2 0.0 1.0
HG23 A:ILE13 4.2 0.0 1.0
CA A:CYS34 4.3 0.0 1.0
CA A:CYS31 4.3 0.0 1.0
N A:CYS34 4.3 0.0 1.0
HB3 A:CYS34 4.4 0.0 1.0
CG2 A:ILE13 4.4 0.0 1.0
H A:CYS14 4.4 0.0 1.0
N A:CYS14 4.4 0.0 1.0
HB2 A:CYS31 4.5 0.0 1.0
CB A:SER30 4.5 0.0 1.0
O A:CYS31 4.5 0.0 1.0
CA A:CYS14 4.6 0.0 1.0
H A:ILE13 4.7 0.0 1.0
CD1 A:ILE13 4.7 0.0 1.0
HB3 A:ALA33 4.7 0.0 1.0
OG A:SER30 4.7 0.0 1.0
C A:CYS31 4.8 0.0 1.0
C A:ILE13 4.8 0.0 1.0
CG1 A:ILE13 4.8 0.0 1.0
CA A:ILE13 4.9 0.0 1.0
HD11 A:ILE13 4.9 0.0 1.0
CA A:CYS11 4.9 0.0 1.0
HG13 A:ILE13 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2ma6

Go back to Zinc Binding Sites List in 2ma6
Zinc binding site 2 out of 2 in the Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:0.0
occ:1.00
ND1 A:HIS28 2.1 0.0 1.0
SG A:CYS26 2.3 0.0 1.0
SG A:CYS48 2.3 0.0 1.0
SG A:CYS45 2.3 0.0 1.0
HB2 A:HIS28 2.7 0.0 1.0
CE1 A:HIS28 3.0 0.0 1.0
CG A:HIS28 3.0 0.0 1.0
HE1 A:HIS28 3.3 0.0 1.0
HB3 A:CYS45 3.3 0.0 1.0
CB A:HIS28 3.4 0.0 1.0
HB3 A:CYS48 3.5 0.0 1.0
HB3 A:CYS26 3.5 0.0 1.0
CB A:CYS45 3.5 0.0 1.0
CB A:CYS26 3.5 0.0 1.0
CB A:CYS48 3.6 0.0 1.0
HB A:THR50 3.7 0.0 1.0
O A:CYS45 3.7 0.0 1.0
HB2 A:CYS26 3.8 0.0 1.0
H A:HIS28 3.8 0.0 1.0
HB3 A:HIS28 4.0 0.0 1.0
H A:CYS48 4.1 0.0 1.0
HB2 A:CYS45 4.1 0.0 1.0
NE2 A:HIS28 4.2 0.0 1.0
CD2 A:HIS28 4.2 0.0 1.0
H A:THR50 4.2 0.0 1.0
HB2 A:CYS48 4.3 0.0 1.0
HB2 A:PHE47 4.3 0.0 1.0
N A:CYS48 4.4 0.0 1.0
OG1 A:THR50 4.4 0.0 1.0
N A:HIS28 4.5 0.0 1.0
CA A:HIS28 4.5 0.0 1.0
CB A:THR50 4.5 0.0 1.0
C A:CYS45 4.6 0.0 1.0
CA A:CYS48 4.6 0.0 1.0
CA A:CYS45 4.6 0.0 1.0
HD2 A:PHE47 4.8 0.0 1.0
CA A:CYS26 4.9 0.0 1.0
H A:LYS49 4.9 0.0 1.0
HB2 A:PHE23 4.9 0.0 1.0
H A:PHE47 4.9 0.0 1.0

Reference:

T.A.Ramelot, Y.Yang, H.Janjua, E.Kohan, H.Wang, R.Xiao, T.B.Acton, J.K.Everett, G.T.Montelione, M.A.Kennedy. Solution uc(Nmr) Structure of the Ring Finger Domain From the KIP1 Ubiquitination-Promoting E3 Complex Protein 1 (KPC1/RNF123) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target HR8700A To Be Published.
Page generated: Wed Dec 16 03:39:57 2020

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