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Zinc in PDB 2m6m: Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10 (pdb code 2m6m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10, PDB code: 2m6m:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2m6m

Go back to Zinc Binding Sites List in 2m6m
Zinc binding site 1 out of 2 in the Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS66 2.1 0.0 1.0
SG A:CYS42 2.3 0.0 1.0
SG A:CYS69 2.3 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
CE1 A:HIS66 2.8 0.0 1.0
HE1 A:HIS66 2.9 0.0 1.0
HB2 A:CYS39 3.0 0.0 1.0
HB3 A:CYS39 3.0 0.0 1.0
CB A:CYS39 3.1 0.0 1.0
H A:CYS42 3.2 0.0 1.0
CG A:HIS66 3.3 0.0 1.0
CB A:CYS69 3.3 0.0 1.0
HB2 A:CYS69 3.3 0.0 1.0
H A:HIS66 3.3 0.0 1.0
HB2 A:HIS66 3.4 0.0 1.0
HB A:ILE41 3.5 0.0 1.0
HB3 A:CYS69 3.5 0.0 1.0
CB A:CYS42 3.5 0.0 1.0
N A:CYS42 3.6 0.0 1.0
HB3 A:CYS42 3.6 0.0 1.0
CB A:HIS66 3.9 0.0 1.0
H A:GLY44 4.0 0.0 1.0
CA A:CYS42 4.0 0.0 1.0
NE2 A:HIS66 4.1 0.0 1.0
N A:HIS66 4.3 0.0 1.0
CD2 A:HIS66 4.3 0.0 1.0
H A:ILE41 4.3 0.0 1.0
HG2 A:MET65 4.4 0.0 1.0
HG21 A:ILE41 4.4 0.0 1.0
HB2 A:CYS42 4.4 0.0 1.0
C A:CYS42 4.4 0.0 1.0
CB A:ILE41 4.5 0.0 1.0
C A:ILE41 4.5 0.0 1.0
HA A:MET65 4.5 0.0 1.0
H A:CYS69 4.6 0.0 1.0
CA A:CYS39 4.6 0.0 1.0
CA A:CYS69 4.7 0.0 1.0
HB3 A:HIS66 4.7 0.0 1.0
CA A:HIS66 4.7 0.0 1.0
HD22 A:LEU52 4.8 0.0 1.0
N A:ARG43 4.8 0.0 1.0
H A:ARG40 4.9 0.0 1.0
CA A:ILE41 4.9 0.0 1.0
CG2 A:ILE41 4.9 0.0 1.0
HA A:CYS69 4.9 0.0 1.0
HE2 A:HIS66 4.9 0.0 1.0
HA A:CYS39 4.9 0.0 1.0
N A:GLY44 4.9 0.0 1.0
N A:ILE41 4.9 0.0 1.0
H A:ARG43 5.0 0.0 1.0
HA3 A:GLY44 5.0 0.0 1.0
HG23 A:ILE41 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2m6m

Go back to Zinc Binding Sites List in 2m6m
Zinc binding site 2 out of 2 in the Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:0.0
occ:1.00
SG A:CYS93 2.3 0.0 1.0
SG A:CYS56 2.3 0.0 1.0
SG A:CYS90 2.3 0.0 1.0
SG A:CYS58 2.3 0.0 1.0
HB2 A:CYS90 3.0 0.0 1.0
HB3 A:CYS56 3.0 0.0 1.0
CB A:CYS90 3.1 0.0 1.0
H A:CYS93 3.1 0.0 1.0
HB3 A:CYS90 3.2 0.0 1.0
CB A:CYS56 3.3 0.0 1.0
H A:TYR95 3.4 0.0 1.0
HB A:ILE92 3.5 0.0 1.0
CB A:CYS93 3.5 0.0 1.0
H A:CYS58 3.5 0.0 1.0
HB3 A:CYS93 3.5 0.0 1.0
N A:CYS58 3.5 0.0 1.0
CB A:CYS58 3.5 0.0 1.0
HA A:CYS58 3.7 0.0 1.0
H A:LYS57 3.7 0.0 1.0
HB2 A:TYR95 3.7 0.0 1.0
CA A:CYS58 3.8 0.0 1.0
N A:CYS93 3.9 0.0 1.0
HB3 A:CYS58 3.9 0.0 1.0
HB2 A:CYS56 3.9 0.0 1.0
H A:HIS94 4.0 0.0 1.0
N A:LYS57 4.1 0.0 1.0
HH12 A:ARG40 4.1 0.0 1.0
CA A:CYS93 4.2 0.0 1.0
HH22 A:ARG40 4.2 0.0 1.0
C A:LYS57 4.3 0.0 1.0
H A:ILE92 4.3 0.0 1.0
HD13 A:ILE97 4.3 0.0 1.0
HB2 A:CYS93 4.3 0.0 1.0
N A:TYR95 4.4 0.0 1.0
HD12 A:ILE92 4.4 0.0 1.0
N A:HIS94 4.4 0.0 1.0
HB2 A:CYS58 4.4 0.0 1.0
CA A:CYS56 4.5 0.0 1.0
C A:CYS93 4.5 0.0 1.0
CA A:CYS90 4.5 0.0 1.0
CB A:ILE92 4.6 0.0 1.0
C A:CYS56 4.6 0.0 1.0
H A:ASP91 4.7 0.0 1.0
HD1 A:TYR95 4.7 0.0 1.0
CB A:TYR95 4.7 0.0 1.0
O A:TYR95 4.8 0.0 1.0
CA A:LYS57 4.8 0.0 1.0
HA A:CYS56 4.8 0.0 1.0
HA A:CYS90 4.9 0.0 1.0
H A:CYS90 4.9 0.0 1.0
N A:ILE92 5.0 0.0 1.0
O A:LYS57 5.0 0.0 1.0
C A:ILE92 5.0 0.0 1.0

Reference:

H.Ahn, J.Lim, W.Son. Solution Structure of Ring Domain of E3 Ubiquitin Ligase DOA10 To Be Published.
Page generated: Wed Dec 16 03:39:39 2020

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