Zinc in PDB 2lze: Ligase 10C

The binding sites of Zinc atom in the Ligase 10C (pdb code 2lze). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Ligase 10C, PDB code: 2lze:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Ligase 10C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ligase 10C within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:0.0 occ:1.00 NE2 A:HIS18 2.0 0.0 1.0 OD2 A:ASP65 2.0 0.0 1.0 OE2 A:GLU28 2.1 0.0 1.0 SG A:CYS57 2.3 0.0 1.0 SG A:CYS60 2.3 0.0 1.0 HB2 A:ASP65 2.4 0.0 1.0 CG A:ASP65 2.8 0.0 1.0 CD A:GLU28 2.8 0.0 1.0 CE1 A:HIS18 3.0 0.0 1.0 CB A:ASP65 3.0 0.0 1.0 CD2 A:HIS18 3.0 0.0 1.0 H A:ASP65 3.2 0.0 1.0 HE1 A:HIS18 3.2 0.0 1.0 HD2 A:HIS18 3.3 0.0 1.0 OE1 A:GLU28 3.4 0.0 1.0 CB A:CYS57 3.5 0.0 1.0 HB3 A:CYS57 3.5 0.0 1.0 CB A:CYS60 3.6 0.0 1.0 HB2 A:CYS57 3.7 0.0 1.0 HB2 A:CYS60 3.7 0.0 1.0 H A:CYS60 3.7 0.0 1.0 N A:ASP65 3.8 0.0 1.0 CA A:ASP65 3.8 0.0 1.0 HG3 A:GLU28 3.8 0.0 1.0 CG A:GLU28 3.9 0.0 1.0 HB3 A:ASP65 3.9 0.0 1.0 OD1 A:ASP65 3.9 0.0 1.0 HA A:CYS60 3.9 0.0 1.0 N A:CYS60 4.1 0.0 1.0 HG2 A:GLU28 4.1 0.0 1.0 CA A:CYS60 4.1 0.0 1.0 C A:ASP65 4.1 0.0 1.0 ND1 A:HIS18 4.1 0.0 1.0 CG A:HIS18 4.2 0.0 1.0 O A:ASP65 4.2 0.0 1.0 HD11 A:ILE68 4.2 0.0 1.0 HB2 A:TYR59 4.3 0.0 1.0 HB3 A:CYS60 4.5 0.0 1.0 HA A:LYS64 4.7 0.0 1.0 HA A:ASP65 4.8 0.0 1.0 CA A:CYS57 4.8 0.0 1.0 N A:LEU66 4.9 0.0 1.0 C A:TYR59 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Ligase 10C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Ligase 10C within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:0.0 occ:1.00 OD1 A:ASP34 2.0 0.0 1.0 SG A:CYS23 2.3 0.0 1.0 HB2 A:ASN26 2.3 0.0 1.0 SG A:CYS20 2.3 0.0 1.0 H A:CYS23 2.6 0.0 1.0 CG A:ASP34 2.6 0.0 1.0 OD2 A:ASP34 2.9 0.0 1.0 CG A:ASN26 3.0 0.0 1.0 HB A:ILE22 3.0 0.0 1.0 OD1 A:ASN26 3.0 0.0 1.0 CB A:ASN26 3.0 0.0 1.0 H A:ASN26 3.2 0.0 1.0 HB3 A:CYS23 3.2 0.0 1.0 CB A:CYS23 3.3 0.0 1.0 HB3 A:CYS20 3.4 0.0 1.0 CB A:CYS20 3.4 0.0 1.0 N A:CYS23 3.5 0.0 1.0 H A:ASN25 3.7 0.0 1.0 HB2 A:CYS20 3.7 0.0 1.0 ND2 A:ASN26 3.8 0.0 1.0 N A:ASN26 3.8 0.0 1.0 HB3 A:ASN26 3.8 0.0 1.0 HG22 A:ILE22 3.8 0.0 1.0 H A:GLY24 3.8 0.0 1.0 CA A:ASN26 3.9 0.0 1.0 CA A:CYS23 4.0 0.0 1.0 CB A:ILE22 4.0 0.0 1.0 CB A:ASP34 4.0 0.0 1.0 HA A:ASP34 4.1 0.0 1.0 HG1 A:THR33 4.2 0.0 1.0 HD22 A:ASN26 4.2 0.0 1.0 HD21 A:ASN26 4.2 0.0 1.0 H A:ILE22 4.2 0.0 1.0 HB2 A:CYS23 4.2 0.0 1.0 OG1 A:THR33 4.3 0.0 1.0 CG2 A:ILE22 4.4 0.0 1.0 N A:GLY24 4.4 0.0 1.0 CA A:ASP34 4.4 0.0 1.0 HD11 A:ILE22 4.4 0.0 1.0 HB2 A:ASP34 4.4 0.0 1.0 HD12 A:ILE22 4.5 0.0 1.0 H A:ASP34 4.5 0.0 1.0 C A:ILE22 4.5 0.0 1.0 N A:ASP34 4.6 0.0 1.0 C A:CYS23 4.6 0.0 1.0 HG2 A:LYS31 4.6 0.0 1.0 HA A:LYS31 4.6 0.0 1.0 HG23 A:ILE22 4.6 0.0 1.0 N A:ASN25 4.7 0.0 1.0 CA A:ILE22 4.7 0.0 1.0 CA A:CYS20 4.7 0.0 1.0 C A:ASN26 4.7 0.0 1.0 HB3 A:ASP34 4.8 0.0 1.0 HA A:ASN26 4.8 0.0 1.0 CD1 A:ILE22 4.8 0.0 1.0 N A:ILE22 4.9 0.0 1.0 H A:ALA27 4.9 0.0 1.0 HA A:CYS23 4.9 0.0 1.0 C A:ASN25 4.9 0.0 1.0

F.A.Chao, A.Morelli, J.C.Iii, L.Churchfield, L.N.Hagmann, L.Shi, L.R.Masterson, R.Sarangi, G.Veglia, B.Seelig. Structure and Dynamics of A Primordial Catalytic Fold Generated By in Vitro Evolution. Nat.Chem.Biol. V. 9 81 2013.
ISSN: ISSN 1552-4450
PubMed: 23222886
DOI: 10.1038/NCHEMBIO.1138