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Zinc in PDB 2lua: Solution Structure of Cxc Domain of MSL2

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Cxc Domain of MSL2 (pdb code 2lua). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of Cxc Domain of MSL2, PDB code: 2lua:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2lua

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Zinc binding site 1 out of 3 in the Solution Structure of Cxc Domain of MSL2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Cxc Domain of MSL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
SG A:CYS33 2.3 0.0 1.0
SG A:CYS14 2.3 0.0 1.0
SG A:CYS16 2.3 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
HB2 A:CYS16 2.7 0.0 1.0
HB2 A:CYS14 3.1 0.0 1.0
HB2 A:CYS33 3.1 0.0 1.0
HA A:CYS28 3.1 0.0 1.0
CB A:CYS16 3.1 0.0 1.0
CB A:CYS14 3.2 0.0 1.0
CB A:CYS33 3.3 0.0 1.0
CB A:CYS28 3.4 0.0 1.0
HB3 A:CYS28 3.4 0.0 1.0
HB3 A:CYS47 3.5 0.0 1.0
HB3 A:CYS14 3.5 0.0 1.0
H A:CYS16 3.6 0.0 1.0
HB3 A:CYS16 3.7 0.0 1.0
HA A:CYS33 3.7 0.0 1.0
CA A:CYS28 3.8 0.0 1.0
ZN A:ZN103 3.8 0.0 1.0
ZN A:ZN102 3.8 0.0 1.0
HD2 A:PRO34 4.0 0.0 1.0
SG A:CYS42 4.1 0.0 1.0
CA A:CYS33 4.1 0.0 1.0
HB2 A:CYS47 4.1 0.0 1.0
HB3 A:CYS33 4.2 0.0 1.0
HB2 A:CYS35 4.2 0.0 1.0
CB A:CYS47 4.2 0.0 1.0
N A:CYS16 4.3 0.0 1.0
CA A:CYS16 4.3 0.0 1.0
HB2 A:CYS28 4.3 0.0 1.0
N A:CYS28 4.6 0.0 1.0
CA A:CYS14 4.6 0.0 1.0
O A:THR27 4.6 0.0 1.0
H A:CYS35 4.7 0.0 1.0
O A:CYS28 4.8 0.0 1.0
SG A:CYS35 4.8 0.0 1.0
C A:CYS28 4.8 0.0 1.0
SG A:CYS47 4.8 0.0 1.0
HA A:CYS16 4.9 0.0 1.0
C A:CYS14 4.9 0.0 1.0
C A:CYS33 4.9 0.0 1.0
H A:TYR36 5.0 0.0 1.0
CD A:PRO34 5.0 0.0 1.0

Zinc binding site 2 out of 3 in 2lua

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Zinc binding site 2 out of 3 in the Solution Structure of Cxc Domain of MSL2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Cxc Domain of MSL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:0.0
occ:1.00
SG A:CYS35 2.3 0.0 1.0
SG A:CYS45 2.3 0.0 1.0
SG A:CYS14 2.3 0.0 1.0
SG A:CYS42 2.3 0.0 1.0
HA A:CYS42 3.0 0.0 1.0
H A:CYS14 3.2 0.0 1.0
HB3 A:CYS42 3.2 0.0 1.0
CB A:CYS42 3.2 0.0 1.0
HB3 A:CYS45 3.2 0.0 1.0
CB A:CYS45 3.3 0.0 1.0
HB2 A:CYS35 3.4 0.0 1.0
CB A:CYS35 3.4 0.0 1.0
HB3 A:CYS14 3.5 0.0 1.0
CB A:CYS14 3.5 0.0 1.0
HB2 A:CYS45 3.6 0.0 1.0
CA A:CYS42 3.6 0.0 1.0
HA A:LYS13 3.6 0.0 1.0
N A:CYS14 3.7 0.0 1.0
HB3 A:CYS35 3.8 0.0 1.0
ZN A:ZN101 3.8 0.0 1.0
ZN A:ZN103 3.8 0.0 1.0
HB2 A:CYS42 4.2 0.0 1.0
CA A:CYS14 4.2 0.0 1.0
HD21 A:ASN52 4.2 0.0 1.0
SG A:CYS33 4.3 0.0 1.0
O A:PRO12 4.3 0.0 1.0
HB3 A:CYS47 4.3 0.0 1.0
C A:LYS13 4.4 0.0 1.0
SG A:CYS47 4.4 0.0 1.0
H A:CYS35 4.4 0.0 1.0
HB2 A:CYS14 4.4 0.0 1.0
N A:CYS42 4.5 0.0 1.0
CA A:LYS13 4.5 0.0 1.0
SG A:CYS28 4.6 0.0 1.0
O A:CYS14 4.7 0.0 1.0
C A:CYS42 4.7 0.0 1.0
CA A:CYS45 4.7 0.0 1.0
O A:SER41 4.7 0.0 1.0
C A:CYS14 4.8 0.0 1.0
CA A:CYS35 4.8 0.0 1.0
HA A:CYS45 4.9 0.0 1.0
HG2 A:PRO34 4.9 0.0 1.0
C A:SER41 4.9 0.0 1.0
CB A:CYS47 5.0 0.0 1.0
H A:ALA43 5.0 0.0 1.0
ND2 A:ASN52 5.0 0.0 1.0
N A:CYS35 5.0 0.0 1.0

Zinc binding site 3 out of 3 in 2lua

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Zinc binding site 3 out of 3 in the Solution Structure of Cxc Domain of MSL2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of Cxc Domain of MSL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn103

b:0.0
occ:1.00
SG A:CYS50 2.3 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
SG A:CYS47 2.3 0.0 1.0
SG A:CYS42 2.3 0.0 1.0
HB2 A:CYS50 2.4 0.0 1.0
CB A:CYS50 2.9 0.0 1.0
HB2 A:CYS42 3.0 0.0 1.0
CB A:CYS42 3.0 0.0 1.0
HB3 A:CYS42 3.1 0.0 1.0
HB2 A:CYS47 3.1 0.0 1.0
CB A:CYS47 3.2 0.0 1.0
CB A:CYS28 3.2 0.0 1.0
HB2 A:CYS28 3.2 0.0 1.0
HB3 A:CYS28 3.3 0.0 1.0
HB3 A:CYS47 3.3 0.0 1.0
HB2 A:ASN52 3.6 0.0 1.0
HB3 A:CYS50 3.6 0.0 1.0
ZN A:ZN101 3.8 0.0 1.0
HA A:CYS50 3.8 0.0 1.0
ZN A:ZN102 3.8 0.0 1.0
HD21 A:ASN52 3.8 0.0 1.0
CA A:CYS50 4.0 0.0 1.0
SG A:CYS14 4.0 0.0 1.0
HB2 A:CYS45 4.3 0.0 1.0
HB2 A:CYS16 4.4 0.0 1.0
HB3 A:ASN52 4.5 0.0 1.0
CB A:ASN52 4.5 0.0 1.0
CA A:CYS42 4.5 0.0 1.0
CA A:CYS47 4.6 0.0 1.0
CA A:CYS28 4.7 0.0 1.0
HB3 A:CYS45 4.7 0.0 1.0
ND2 A:ASN52 4.7 0.0 1.0
C A:CYS50 4.8 0.0 1.0
HA A:CYS42 4.8 0.0 1.0
H A:CYS47 4.9 0.0 1.0
CB A:CYS45 4.9 0.0 1.0
HA A:CYS28 4.9 0.0 1.0
SG A:CYS33 5.0 0.0 1.0
H A:CYS42 5.0 0.0 1.0
N A:CYS50 5.0 0.0 1.0

Reference:

S.Zheng, J.Wang, Y.Feng, J.Wang, K.Ye. Solution Structure of MSL2 Cxc Domain Reveals An Unusual Zn(3)Cys(9) Cluster and Similarity to Pre-Set Domains of Histone Lysine Methyltransferases. Plos One V. 7 45437 2012.
ISSN: ESSN 1932-6203
PubMed: 23029009
DOI: 10.1371/JOURNAL.PONE.0045437
Page generated: Wed Dec 16 03:38:08 2020

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