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Zinc in PDB 2lt7: Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna (pdb code 2lt7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna, PDB code: 2lt7:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2lt7

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Zinc binding site 1 out of 3 in the Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:20.0
occ:1.00
NE2 A:HIS512 2.1 20.0 1.0
NE2 A:HIS516 2.1 20.0 1.0
SG A:CYS496 2.3 20.0 1.0
SG A:CYS499 2.3 20.0 1.0
HE1 A:HIS512 2.7 20.0 1.0
CE1 A:HIS512 2.7 20.0 1.0
CD2 A:HIS516 2.8 20.0 1.0
HD2 A:HIS516 2.8 20.0 1.0
HB3 A:CYS496 2.9 20.0 1.0
H A:CYS499 2.9 20.0 1.0
CB A:CYS496 3.1 20.0 1.0
HB A:VAL498 3.2 20.0 1.0
HB2 A:CYS496 3.3 20.0 1.0
CE1 A:HIS516 3.3 20.0 1.0
CD2 A:HIS512 3.3 20.0 1.0
CB A:CYS499 3.6 20.0 1.0
HB3 A:CYS499 3.7 20.0 1.0
HB2 A:ARG501 3.7 20.0 1.0
HE1 A:HIS516 3.7 20.0 1.0
HD2 A:HIS512 3.8 20.0 1.0
N A:CYS499 3.8 20.0 1.0
HD2 A:ARG501 3.9 20.0 1.0
ND1 A:HIS512 4.0 20.0 1.0
CG A:HIS516 4.0 20.0 1.0
H A:ARG501 4.1 20.0 1.0
HD1 A:PHE513 4.2 20.0 1.0
ND1 A:HIS516 4.3 20.0 1.0
CG A:HIS512 4.3 20.0 1.0
H A:VAL498 4.3 20.0 1.0
CB A:VAL498 4.3 20.0 1.0
CA A:CYS499 4.3 20.0 1.0
HH A:TYR503 4.4 20.0 1.0
HB2 A:CYS499 4.5 20.0 1.0
CA A:CYS496 4.5 20.0 1.0
H A:LYS500 4.5 20.0 1.0
HA A:PHE513 4.6 20.0 1.0
HE2 A:TYR503 4.6 20.0 1.0
CB A:ARG501 4.7 20.0 1.0
HG3 A:ARG501 4.7 20.0 1.0
HD1 A:HIS512 4.8 20.0 1.0
CD A:ARG501 4.9 20.0 1.0
HG11 A:VAL498 4.9 20.0 1.0
C A:VAL498 4.9 20.0 1.0
C A:CYS496 4.9 20.0 1.0
N A:VAL498 4.9 20.0 1.0
C A:CYS499 4.9 20.0 1.0
CA A:VAL498 4.9 20.0 1.0
N A:LYS500 5.0 20.0 1.0
HG22 A:VAL498 5.0 20.0 1.0

Zinc binding site 2 out of 3 in 2lt7

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Zinc binding site 2 out of 3 in the Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn702

b:20.0
occ:1.00
NE2 A:HIS544 2.1 20.0 1.0
NE2 A:HIS540 2.1 20.0 1.0
SG A:CYS527 2.3 20.0 1.0
SG A:CYS524 2.3 20.0 1.0
HD2 A:HIS544 2.6 20.0 1.0
CD2 A:HIS544 2.6 20.0 1.0
CD2 A:HIS540 2.9 20.0 1.0
HD2 A:HIS540 3.0 20.0 1.0
CE1 A:HIS540 3.3 20.0 1.0
CB A:CYS524 3.3 20.0 1.0
HB2 A:CYS524 3.3 20.0 1.0
HB3 A:CYS524 3.3 20.0 1.0
CE1 A:HIS544 3.4 20.0 1.0
HB3 A:CYS527 3.5 20.0 1.0
CB A:CYS527 3.5 20.0 1.0
H A:CYS527 3.5 20.0 1.0
HE1 A:HIS540 3.6 20.0 1.0
HB2 A:TYR526 3.7 20.0 1.0
HB3 A:LYS529 3.8 20.0 1.0
HE1 A:HIS544 3.9 20.0 1.0
N A:CYS527 3.9 20.0 1.0
CG A:HIS544 3.9 20.0 1.0
HD2 A:TYR526 4.1 20.0 1.0
CG A:HIS540 4.1 20.0 1.0
CA A:CYS527 4.2 20.0 1.0
HE1 A:PHE531 4.2 20.0 1.0
HD3 A:LYS529 4.3 20.0 1.0
ND1 A:HIS544 4.3 20.0 1.0
ND1 A:HIS540 4.3 20.0 1.0
HB2 A:CYS527 4.4 20.0 1.0
H A:TYR526 4.4 20.0 1.0
HB2 A:LYS529 4.6 20.0 1.0
H A:LYS529 4.6 20.0 1.0
H A:ARG525 4.6 20.0 1.0
C A:TYR526 4.6 20.0 1.0
HG2 A:GLU541 4.6 20.0 1.0
CB A:LYS529 4.7 20.0 1.0
CA A:CYS524 4.7 20.0 1.0
CB A:TYR526 4.8 20.0 1.0
C A:CYS527 4.8 20.0 1.0
O A:CYS527 4.8 20.0 1.0
HA A:GLU541 4.9 20.0 1.0
N A:TYR526 4.9 20.0 1.0
HG3 A:GLU541 4.9 20.0 1.0

Zinc binding site 3 out of 3 in 2lt7

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Zinc binding site 3 out of 3 in the Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution uc(Nmr) Structure of Kaiso Zinc Finger Dna Binding Domain in Complex with Kaiso Binding Site Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn703

b:20.0
occ:1.00
NE2 A:HIS568 2.1 20.0 1.0
NE2 A:HIS573 2.1 20.0 1.0
SG A:CYS555 2.3 20.0 1.0
SG A:CYS552 2.3 20.0 1.0
HE1 A:HIS568 2.8 20.0 1.0
CE1 A:HIS568 2.8 20.0 1.0
CD2 A:HIS573 2.9 20.0 1.0
HD2 A:HIS573 3.0 20.0 1.0
H A:CYS555 3.0 20.0 1.0
CE1 A:HIS573 3.2 20.0 1.0
HB1 A:ALA554 3.2 20.0 1.0
CB A:CYS552 3.3 20.0 1.0
HB3 A:CYS552 3.3 20.0 1.0
CD2 A:HIS568 3.4 20.0 1.0
HB2 A:CYS552 3.4 20.0 1.0
CB A:CYS555 3.6 20.0 1.0
HE1 A:HIS573 3.6 20.0 1.0
HB3 A:CYS555 3.6 20.0 1.0
HD2 A:HIS568 3.8 20.0 1.0
N A:CYS555 3.8 20.0 1.0
HB2 A:LYS557 3.9 20.0 1.0
ND1 A:HIS568 4.0 20.0 1.0
CG A:HIS573 4.2 20.0 1.0
HG12 A:ILE569 4.2 20.0 1.0
HD3 A:LYS557 4.3 20.0 1.0
CA A:CYS555 4.3 20.0 1.0
H A:LYS557 4.3 20.0 1.0
HG13 A:VAL572 4.3 20.0 1.0
ND1 A:HIS573 4.3 20.0 1.0
H A:ALA554 4.3 20.0 1.0
CB A:ALA554 4.3 20.0 1.0
CG A:HIS568 4.3 20.0 1.0
HE2 A:PHE559 4.3 20.0 1.0
HB2 A:CYS555 4.4 20.0 1.0
HA A:ILE569 4.5 20.0 1.0
HB A:VAL572 4.6 20.0 1.0
H A:GLY556 4.6 20.0 1.0
HG11 A:VAL572 4.7 20.0 1.0
HB2 A:ALA554 4.7 20.0 1.0
CA A:CYS552 4.7 20.0 1.0
C A:ALA554 4.8 20.0 1.0
HZ A:PHE559 4.8 20.0 1.0
HD1 A:HIS568 4.9 20.0 1.0
N A:ALA554 4.9 20.0 1.0
C A:CYS555 4.9 20.0 1.0
CA A:ALA554 4.9 20.0 1.0
CG1 A:VAL572 4.9 20.0 1.0
HB3 A:ALA554 4.9 20.0 1.0
HG13 A:ILE569 5.0 20.0 1.0
CB A:LYS557 5.0 20.0 1.0
N A:GLY556 5.0 20.0 1.0
HG3 A:LYS557 5.0 20.0 1.0

Reference:

B.A.Buck-Koehntop, R.L.Stanfield, D.C.Ekiert, M.A.Martinez-Yamout, H.J.Dyson, I.A.Wilson, P.E.Wright. Molecular Basis For Recognition of Methylated and Specific Dna Sequences By the Zinc Finger Protein Kaiso. Proc.Natl.Acad.Sci.Usa V. 109 15229 2012.
ISSN: ISSN 0027-8424
PubMed: 22949637
DOI: 10.1073/PNAS.1213726109
Page generated: Wed Dec 16 03:38:07 2020

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