Zinc in PDB 2lri: uc(Nmr) Structure of the Second Phd Finger of Aire (Aire-PHD2)

The binding sites of Zinc atom in the uc(Nmr) Structure of the Second Phd Finger of Aire (Aire-PHD2) (pdb code 2lri). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the Second Phd Finger of Aire (Aire-PHD2), PDB code: 2lri:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the Second Phd Finger of Aire (Aire-PHD2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the Second Phd Finger of Aire (Aire-PHD2) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn101 b:0.4 occ:1.00 ND1 C:HIS35 2.0 0.4 1.0 SG C:CYS38 2.3 0.5 1.0 SG C:CYS18 2.3 0.8 1.0 SG C:CYS15 2.3 0.5 1.0 HB2 C:HIS35 2.7 0.4 1.0 CE1 C:HIS35 2.9 0.4 1.0 CG C:HIS35 3.0 0.3 1.0 HB2 C:CYS18 3.1 1.4 1.0 HE1 C:HIS35 3.2 0.5 1.0 CB C:HIS35 3.3 0.3 1.0 HB3 C:CYS15 3.4 0.5 1.0 CB C:CYS15 3.4 0.5 1.0 CB C:CYS18 3.4 0.8 1.0 CB C:CYS38 3.4 0.3 1.0 HB C:VAL17 3.4 0.6 1.0 HB2 C:CYS38 3.5 0.4 1.0 HB3 C:CYS38 3.5 0.4 1.0 HB2 C:CYS15 3.6 0.6 1.0 H C:HIS35 3.6 0.4 1.0 H C:CYS18 3.9 0.5 1.0 NE2 C:HIS35 4.0 0.4 1.0 HB3 C:HIS35 4.0 0.4 1.0 CD2 C:HIS35 4.0 0.4 1.0 HB3 C:CYS18 4.1 1.6 1.0 N C:CYS18 4.1 0.6 1.0 N C:HIS35 4.3 0.3 1.0 CA C:CYS18 4.4 0.7 1.0 CA C:HIS35 4.4 0.3 1.0 CB C:VAL17 4.5 0.8 1.0 HG13 C:VAL17 4.7 1.5 1.0 CA C:CYS38 4.8 0.4 1.0 CA C:CYS15 4.8 0.5 1.0 HA C:CYS18 4.8 0.8 1.0 H C:CYS38 4.8 0.4 1.0 H C:VAL17 4.8 0.5 1.0 C C:VAL17 4.8 0.7 1.0 HG11 C:VAL17 4.9 1.5 1.0 HE2 C:HIS35 4.9 0.5 1.0 CG1 C:VAL17 5.0 1.0 1.0

Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the Second Phd Finger of Aire (Aire-PHD2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the Second Phd Finger of Aire (Aire-PHD2) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn102 b:0.5 occ:1.00 SG C:CYS56 2.3 0.7 1.0 SG C:CYS27 2.3 0.4 1.0 SG C:CYS30 2.3 0.8 1.0 SG C:CYS53 2.3 0.5 1.0 H C:CYS53 3.0 0.4 1.0 HB2 C:CYS56 3.1 0.5 1.0 HB3 C:CYS53 3.2 0.5 1.0 HB3 C:CYS30 3.2 0.7 1.0 CB C:CYS56 3.3 0.5 1.0 CB C:CYS27 3.4 0.3 1.0 CB C:CYS30 3.4 0.4 1.0 CB C:CYS53 3.4 0.5 1.0 HB3 C:CYS27 3.4 0.3 1.0 H C:CYS56 3.4 0.5 1.0 HB2 C:CYS27 3.5 0.4 1.0 H C:CYS30 3.6 0.3 1.0 N C:CYS53 3.8 0.3 1.0 N C:CYS30 3.9 0.3 1.0 HB2 C:HIS29 3.9 0.6 1.0 HB3 C:CYS56 4.1 0.6 1.0 CA C:CYS30 4.1 0.3 1.0 N C:CYS56 4.2 0.5 1.0 CA C:CYS53 4.2 0.4 1.0 HB3 C:SER55 4.2 1.1 1.0 HB2 C:CYS53 4.2 0.6 1.0 HB2 C:CYS30 4.3 0.9 1.0 HB3 C:ALA32 4.3 1.1 1.0 CA C:CYS56 4.4 0.5 1.0 H C:HIS29 4.4 0.3 1.0 HA C:ARG52 4.4 0.3 1.0 HB2 C:ALA32 4.5 1.1 1.0 C C:CYS30 4.5 0.3 1.0 C C:HIS29 4.6 0.3 1.0 O C:CYS30 4.8 0.3 1.0 CA C:CYS27 4.8 0.2 1.0 C C:CYS53 4.8 0.5 1.0 CB C:HIS29 4.8 0.4 1.0 HA C:CYS56 4.8 0.6 1.0 CB C:ALA32 4.9 0.4 1.0 O C:CYS53 5.0 0.5 1.0 HB3 C:HIS29 5.0 0.6 1.0 N C:HIS29 5.0 0.3 1.0

M.Gaetani, V.Matafora, M.Saare, D.Spiliotopoulos, L.Mollica, G.Quilici, F.Chignola, V.Mannella, C.Zucchelli, P.Peterson, A.Bachi, G.Musco. Aire-Phd Fingers Are Structural Hubs to Maintain the Integrity of Chromatin-Associated Interactome. Nucleic Acids Res. V. 40 11756 2012.
ISSN: ISSN 0305-1048
PubMed: 23074189
DOI: 10.1093/NAR/GKS933