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Zinc in PDB 2lk5: Solution Structure of the Zn(II) Form of Desulforedoxin

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Zn(II) Form of Desulforedoxin (pdb code 2lk5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Zn(II) Form of Desulforedoxin, PDB code: 2lk5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2lk5

Go back to Zinc Binding Sites List in 2lk5
Zinc binding site 1 out of 2 in the Solution Structure of the Zn(II) Form of Desulforedoxin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zn(II) Form of Desulforedoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn37

b:0.0
occ:1.00
SG A:CYS9 2.2 0.0 1.0
SG A:CYS29 2.3 0.0 1.0
SG A:CYS12 2.3 0.0 1.0
SG A:CYS28 2.4 0.0 1.0
H A:CYS12 3.0 0.0 1.0
HB3 A:CYS12 3.1 0.0 1.0
HB2 A:CYS9 3.2 0.0 1.0
HB3 A:CYS28 3.2 0.0 1.0
CB A:CYS9 3.2 0.0 1.0
HB2 A:CYS29 3.2 0.0 1.0
CB A:CYS12 3.3 0.0 1.0
CB A:CYS29 3.3 0.0 1.0
CB A:CYS28 3.4 0.0 1.0
HA3 B:GLY24 3.4 0.0 1.0
HB3 A:CYS9 3.4 0.0 1.0
C A:CYS28 3.7 0.0 1.0
N A:CYS29 3.7 0.0 1.0
HB2 A:LEU11 3.7 0.0 1.0
N A:CYS12 3.9 0.0 1.0
H A:CYS29 3.9 0.0 1.0
O A:CYS28 4.0 0.0 1.0
CA A:CYS28 4.0 0.0 1.0
HB3 A:GLN14 4.1 0.0 1.0
CA A:CYS29 4.1 0.0 1.0
HB2 A:CYS12 4.1 0.0 1.0
CA A:CYS12 4.2 0.0 1.0
HB3 A:CYS29 4.2 0.0 1.0
H A:GLY13 4.3 0.0 1.0
HB2 A:CYS28 4.3 0.0 1.0
H A:GLN14 4.4 0.0 1.0
CA B:GLY24 4.4 0.0 1.0
HB2 A:GLN14 4.4 0.0 1.0
HA A:CYS28 4.4 0.0 1.0
HA A:CYS29 4.6 0.0 1.0
CA A:CYS9 4.6 0.0 1.0
HE21 A:GLN14 4.6 0.0 1.0
HB3 A:LEU11 4.7 0.0 1.0
CB A:LEU11 4.7 0.0 1.0
H A:LEU11 4.7 0.0 1.0
CB A:GLN14 4.8 0.0 1.0
N B:GLY24 4.9 0.0 1.0
HA A:CYS9 4.9 0.0 1.0
HA2 B:GLY24 4.9 0.0 1.0
HA A:CYS12 4.9 0.0 1.0
N A:GLY13 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2lk5

Go back to Zinc Binding Sites List in 2lk5
Zinc binding site 2 out of 2 in the Solution Structure of the Zn(II) Form of Desulforedoxin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zn(II) Form of Desulforedoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn37

b:0.0
occ:1.00
SG B:CYS29 2.1 0.0 1.0
SG B:CYS9 2.2 0.0 1.0
SG B:CYS12 2.3 0.0 1.0
SG B:CYS28 2.5 0.0 1.0
H B:CYS12 2.6 0.0 1.0
O B:CYS28 3.2 0.0 1.0
CB B:CYS9 3.2 0.0 1.0
HB2 B:CYS9 3.2 0.0 1.0
HB3 B:CYS29 3.3 0.0 1.0
HB3 B:CYS9 3.3 0.0 1.0
CB B:CYS29 3.3 0.0 1.0
HB2 B:CYS28 3.4 0.0 1.0
HB2 B:LEU11 3.4 0.0 1.0
C B:CYS28 3.4 0.0 1.0
CB B:CYS28 3.5 0.0 1.0
CB B:CYS12 3.5 0.0 1.0
HB3 B:CYS12 3.5 0.0 1.0
N B:CYS12 3.6 0.0 1.0
HG B:LEU11 3.9 0.0 1.0
H B:LEU11 3.9 0.0 1.0
N B:CYS29 3.9 0.0 1.0
HD12 B:LEU11 3.9 0.0 1.0
H B:GLY13 4.0 0.0 1.0
CA B:CYS28 4.0 0.0 1.0
HB2 B:GLU31 4.1 0.0 1.0
CA B:CYS12 4.1 0.0 1.0
CA B:CYS29 4.2 0.0 1.0
HB2 B:CYS29 4.2 0.0 1.0
HB3 B:GLU31 4.2 0.0 1.0
HD13 B:LEU11 4.2 0.0 1.0
CB B:LEU11 4.2 0.0 1.0
CG B:LEU11 4.4 0.0 1.0
CD1 B:LEU11 4.4 0.0 1.0
HB2 B:CYS12 4.4 0.0 1.0
HB3 B:CYS28 4.4 0.0 1.0
HA B:MET33 4.4 0.0 1.0
HG3 B:MET33 4.5 0.0 1.0
H B:GLN14 4.5 0.0 1.0
HA3 A:GLY24 4.5 0.0 1.0
H B:CYS29 4.5 0.0 1.0
H B:GLU10 4.6 0.0 1.0
CA B:CYS9 4.6 0.0 1.0
N B:LEU11 4.6 0.0 1.0
C B:LEU11 4.7 0.0 1.0
O B:CYS29 4.7 0.0 1.0
CB B:GLU31 4.7 0.0 1.0
CA B:LEU11 4.7 0.0 1.0
N B:GLY13 4.8 0.0 1.0
HB3 B:GLN14 4.8 0.0 1.0
C B:CYS29 4.8 0.0 1.0
HA B:CYS28 4.9 0.0 1.0
HA B:CYS9 4.9 0.0 1.0
H B:CYS28 4.9 0.0 1.0
N B:CYS28 4.9 0.0 1.0
HA B:CYS12 4.9 0.0 1.0
HG2 B:MET33 5.0 0.0 1.0

Reference:

B.J.Goodfellow, P.Tavares, M.Romao, C.Czaja, F.Rusnak, J.Legall, I.Moura, J.J.G.Moura. The Solution Structure of Desulforedoxin, A Simple Iron-Sulfur Protein - An uc(Nmr) Study of the Zinc Derivative J.Biol.Inorg.Chem. V. 1 341 1996.
ISSN: ISSN 0949-8257
DOI: 10.1007/S007750050062
Page generated: Wed Dec 16 03:37:51 2020

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