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Zinc in PDB 2lbm: Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3

Enzymatic activity of Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3

All present enzymatic activity of Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3:
3.6.4.12;

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3 (pdb code 2lbm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3, PDB code: 2lbm:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2lbm

Go back to Zinc Binding Sites List in 2lbm
Zinc binding site 1 out of 3 in the Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:0.0
occ:1.00
SG A:CYS171 2.3 0.0 1.0
SG A:CYS200 2.3 0.0 1.0
SG A:CYS174 2.3 0.0 1.0
SG A:CYS197 2.3 0.0 1.0
H A:CYS197 2.8 0.0 1.0
HB2 A:CYS174 3.3 0.0 1.0
CB A:CYS171 3.4 0.0 1.0
HB2 A:CYS200 3.4 0.0 1.0
HB2 A:CYS171 3.4 0.0 1.0
CB A:CYS174 3.5 0.0 1.0
CB A:CYS200 3.5 0.0 1.0
HB3 A:CYS171 3.5 0.0 1.0
HB3 A:CYS197 3.5 0.0 1.0
CB A:CYS197 3.5 0.0 1.0
H A:CYS174 3.6 0.0 1.0
N A:CYS197 3.6 0.0 1.0
HB1 A:ALA173 3.6 0.0 1.0
HB A:ILE196 3.7 0.0 1.0
H A:CYS200 3.8 0.0 1.0
N A:CYS174 4.0 0.0 1.0
N A:CYS200 4.1 0.0 1.0
CA A:CYS197 4.1 0.0 1.0
HB3 A:CYS174 4.2 0.0 1.0
CA A:CYS200 4.3 0.0 1.0
HB3 A:CYS200 4.3 0.0 1.0
H A:ALA173 4.4 0.0 1.0
CA A:CYS174 4.4 0.0 1.0
HA A:CYS200 4.4 0.0 1.0
HB2 A:CYS197 4.4 0.0 1.0
HB2 A:ASN199 4.4 0.0 1.0
HA A:ILE196 4.4 0.0 1.0
O A:CYS197 4.5 0.0 1.0
CB A:ALA173 4.5 0.0 1.0
C A:ILE196 4.6 0.0 1.0
HB2 A:ALA173 4.6 0.0 1.0
CB A:ILE196 4.6 0.0 1.0
C A:CYS197 4.7 0.0 1.0
C A:ALA173 4.7 0.0 1.0
CA A:CYS171 4.8 0.0 1.0
CA A:ILE196 4.8 0.0 1.0
HB3 A:ASN199 4.8 0.0 1.0
HA A:CYS174 4.8 0.0 1.0
N A:ALA173 4.9 0.0 1.0
HA A:CYS171 5.0 0.0 1.0
CA A:ALA173 5.0 0.0 1.0

Zinc binding site 2 out of 3 in 2lbm

Go back to Zinc Binding Sites List in 2lbm
Zinc binding site 2 out of 3 in the Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2

b:0.0
occ:1.00
SG A:CYS220 2.3 0.0 1.0
SG A:CYS243 2.3 0.0 1.0
SG A:CYS240 2.3 0.0 1.0
SG A:CYS223 2.3 0.0 1.0
H A:CYS223 2.9 0.0 1.0
HB2 A:CYS243 3.1 0.0 1.0
CB A:CYS220 3.3 0.0 1.0
CB A:CYS243 3.3 0.0 1.0
HB3 A:CYS220 3.3 0.0 1.0
HB2 A:CYS220 3.4 0.0 1.0
HB3 A:CYS223 3.5 0.0 1.0
CB A:CYS223 3.5 0.0 1.0
HB3 A:CYS240 3.6 0.0 1.0
CB A:CYS240 3.6 0.0 1.0
H A:CYS240 3.7 0.0 1.0
N A:CYS223 3.7 0.0 1.0
HB3 A:TRP222 3.7 0.0 1.0
H A:CYS243 3.9 0.0 1.0
HB3 A:CYS243 4.1 0.0 1.0
HD1 A:PHE239 4.1 0.0 1.0
N A:CYS240 4.2 0.0 1.0
CA A:CYS223 4.2 0.0 1.0
N A:CYS243 4.3 0.0 1.0
CA A:CYS243 4.3 0.0 1.0
HB3 A:LYS242 4.3 0.0 1.0
HB2 A:CYS223 4.4 0.0 1.0
HB2 A:CYS240 4.4 0.0 1.0
HB2 A:TRP222 4.4 0.0 1.0
CA A:CYS240 4.4 0.0 1.0
H A:TRP222 4.4 0.0 1.0
HB2 A:GLU225 4.4 0.0 1.0
CB A:TRP222 4.5 0.0 1.0
H A:ALA224 4.5 0.0 1.0
HA A:CYS243 4.6 0.0 1.0
O A:CYS240 4.6 0.0 1.0
CA A:CYS220 4.7 0.0 1.0
C A:CYS223 4.8 0.0 1.0
C A:TRP222 4.8 0.0 1.0
N A:ALA224 4.9 0.0 1.0
C A:CYS240 4.9 0.0 1.0
N A:TRP222 4.9 0.0 1.0
HA A:CYS220 4.9 0.0 1.0
HA A:PHE239 4.9 0.0 1.0

Zinc binding site 3 out of 3 in 2lbm

Go back to Zinc Binding Sites List in 2lbm
Zinc binding site 3 out of 3 in the Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Add Domain of Atrx Complexed with Histone Tail H3 1-15 K9ME3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn3

b:0.0
occ:1.00
SG A:CYS235 2.3 0.0 1.0
SG A:CYS265 2.3 0.0 1.0
SG A:CYS232 2.3 0.0 1.0
SG A:CYS268 2.3 0.0 1.0
H A:CYS235 2.8 0.0 1.0
H A:CYS268 3.1 0.0 1.0
HB3 A:CYS235 3.3 0.0 1.0
CB A:CYS232 3.3 0.0 1.0
CB A:CYS235 3.4 0.0 1.0
HB2 A:CYS232 3.4 0.0 1.0
HB2 A:PHE234 3.4 0.0 1.0
HB3 A:CYS232 3.4 0.0 1.0
HB2 A:CYS268 3.5 0.0 1.0
HB3 A:CYS265 3.6 0.0 1.0
CB A:CYS268 3.6 0.0 1.0
CB A:CYS265 3.6 0.0 1.0
HB A:ILE267 3.7 0.0 1.0
H A:CYS265 3.7 0.0 1.0
N A:CYS235 3.7 0.0 1.0
HD1 A:TYR264 3.8 0.0 1.0
N A:CYS268 4.0 0.0 1.0
N A:CYS265 4.1 0.0 1.0
CA A:CYS235 4.2 0.0 1.0
HB2 A:CYS235 4.3 0.0 1.0
HA A:TYR264 4.3 0.0 1.0
H A:PHE234 4.3 0.0 1.0
CA A:CYS268 4.4 0.0 1.0
HB3 A:CYS268 4.4 0.0 1.0
HB2 A:CYS265 4.4 0.0 1.0
HB2 A:ASN237 4.4 0.0 1.0
CB A:PHE234 4.4 0.0 1.0
H A:ILE267 4.4 0.0 1.0
CA A:CYS265 4.5 0.0 1.0
HB3 A:ASN237 4.5 0.0 1.0
HG12 A:ILE267 4.5 0.0 1.0
HD2 A:PHE234 4.5 0.0 1.0
HB3 A:PHE234 4.6 0.0 1.0
CB A:ILE267 4.6 0.0 1.0
HA A:CYS268 4.7 0.0 1.0
C A:TYR264 4.7 0.0 1.0
CD1 A:TYR264 4.7 0.0 1.0
CA A:CYS232 4.7 0.0 1.0
C A:PHE234 4.8 0.0 1.0
C A:CYS235 4.8 0.0 1.0
N A:PHE234 4.9 0.0 1.0
CB A:ASN237 5.0 0.0 1.0
CA A:TYR264 5.0 0.0 1.0
CG1 A:ILE267 5.0 0.0 1.0
HG13 A:ILE267 5.0 0.0 1.0

Reference:

S.Eustermann, J.Yang, M.J.Law, R.Amos, L.M.Chapman, C.Jelinska, D.Garrick, D.Clynes, R.J.Gibbons, D.Rhodes, D.R.Higgs, D.Neuhaus. Combinatorial Readout of Histone H3 Modifications Specifies Localization of Atrx to Heterochromatin Nat.Struct.Mol.Biol. 2011.
ISSN: ESSN 1545-9985
PubMed: 21666677
DOI: 10.1038/NSMB.2070
Page generated: Wed Dec 16 03:36:39 2020

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