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Zinc in PDB 2l9z: Zinc Knuckle in PRDM4

Zinc Binding Sites:

The binding sites of Zinc atom in the Zinc Knuckle in PRDM4 (pdb code 2l9z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Zinc Knuckle in PRDM4, PDB code: 2l9z:

Zinc binding site 1 out of 1 in 2l9z

Go back to Zinc Binding Sites List in 2l9z
Zinc binding site 1 out of 1 in the Zinc Knuckle in PRDM4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc Knuckle in PRDM4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:1.3
occ:1.00
ND1 A:HIS391 2.0 1.8 1.0
SG A:CYS377 2.3 1.5 1.0
SG A:CYS380 2.3 1.8 1.0
SG A:CYS388 2.3 1.5 1.0
HB2 A:HIS391 2.7 1.9 1.0
CE1 A:HIS391 3.0 2.1 1.0
CG A:HIS391 3.0 2.0 1.0
HB2 A:CYS380 3.2 1.6 1.0
HE1 A:HIS391 3.2 2.3 1.0
H A:HIS391 3.2 2.3 1.0
HB2 A:LEU379 3.2 2.4 1.0
CB A:HIS391 3.4 2.2 1.0
CB A:CYS380 3.4 2.0 1.0
HB2 A:CYS388 3.4 1.4 1.0
CB A:CYS388 3.4 1.6 1.0
HB3 A:CYS377 3.4 1.2 1.0
CB A:CYS377 3.4 1.3 1.0
HE2 A:TYR384 3.5 3.0 1.0
HB3 A:CYS388 3.7 1.8 1.0
HB2 A:CYS377 3.7 1.1 1.0
HB3 A:GLU390 3.7 2.8 1.0
N A:HIS391 4.0 2.5 1.0
H A:CYS380 4.0 2.3 1.0
N A:CYS380 4.0 2.5 1.0
NE2 A:HIS391 4.1 2.4 1.0
CD2 A:HIS391 4.1 2.4 1.0
HB3 A:HIS391 4.2 2.6 1.0
HB3 A:CYS380 4.2 2.2 1.0
CB A:LEU379 4.2 2.9 1.0
HD22 A:LEU379 4.3 3.5 1.0
CA A:CYS380 4.3 2.5 1.0
CA A:HIS391 4.3 2.5 1.0
H A:GLU390 4.4 2.7 1.0
CE2 A:TYR384 4.4 2.3 1.0
HB3 A:LEU379 4.5 2.9 1.0
OH A:TYR384 4.5 2.5 1.0
C A:LEU379 4.5 2.9 1.0
HA A:CYS380 4.6 2.8 1.0
CB A:GLU390 4.7 2.9 1.0
HD2 A:PRO389 4.8 2.4 1.0
CA A:CYS377 4.8 1.9 1.0
CA A:CYS388 4.8 2.1 1.0
CA A:LEU379 4.9 3.1 1.0
HB2 A:GLU390 4.9 3.0 1.0
CZ A:TYR384 4.9 2.2 1.0
H A:LEU379 4.9 2.9 1.0
HE2 A:HIS391 5.0 2.7 1.0

Reference:

K.Briknarova, D.Z.Atwater, J.M.Glicken, S.J.Maynard, T.E.Ness. The Pr/Set Domain in PRDM4 Is Preceded By A Zinc Knuckle. Proteins V. 79 2341 2011.
ISSN: ISSN 0887-3585
PubMed: 21604305
DOI: 10.1002/PROT.23057
Page generated: Wed Dec 16 03:36:32 2020

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