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Zinc in PDB 2l6y: Haddock Model of GATA1NF:LMO2LIM2-LDB1LID

Zinc Binding Sites:

The binding sites of Zinc atom in the Haddock Model of GATA1NF:LMO2LIM2-LDB1LID (pdb code 2l6y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Haddock Model of GATA1NF:LMO2LIM2-LDB1LID, PDB code: 2l6y:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2l6y

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Zinc binding site 1 out of 3 in the Haddock Model of GATA1NF:LMO2LIM2-LDB1LID


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Haddock Model of GATA1NF:LMO2LIM2-LDB1LID within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn239

b:0.3
occ:1.00
SG A:CYS225 2.3 0.3 1.0
SG A:CYS204 2.3 0.3 1.0
SG A:CYS228 2.3 0.4 1.0
SG A:CYS207 2.3 0.5 1.0
HB2 A:CYS228 3.0 0.4 1.0
H A:CYS207 3.0 0.4 1.0
H A:CYS225 3.1 0.3 1.0
HB3 A:CYS225 3.1 0.4 1.0
H A:CYS228 3.1 0.4 1.0
CB A:CYS228 3.3 0.4 1.0
CB A:CYS204 3.3 0.3 1.0
HB3 A:CYS207 3.3 0.5 1.0
HB2 A:CYS204 3.3 0.3 1.0
HB3 A:CYS204 3.3 0.3 1.0
HB3 A:ASN206 3.3 0.9 1.0
CB A:CYS225 3.4 0.4 1.0
CB A:CYS207 3.4 0.5 1.0
H A:GLY208 3.5 0.6 1.0
N A:CYS207 3.6 0.5 1.0
N A:CYS225 3.9 0.3 1.0
N A:CYS228 4.0 0.4 1.0
H A:ASN226 4.0 0.4 1.0
HB3 A:CYS228 4.1 0.5 1.0
CA A:CYS207 4.1 0.5 1.0
HB1 A:ALA227 4.1 0.8 1.0
HB2 A:CYS225 4.1 0.5 1.0
HD21 A:ASN206 4.1 1.6 1.0
H A:ALA209 4.2 0.6 1.0
H A:ASN206 4.2 0.5 1.0
CA A:CYS228 4.2 0.4 1.0
HB2 A:CYS207 4.3 0.6 1.0
CA A:CYS225 4.3 0.3 1.0
N A:GLY208 4.4 0.5 1.0
CB A:ASN206 4.4 0.6 1.0
HD23 A:LEU224 4.5 1.0 1.0
HA A:LEU224 4.5 0.3 1.0
C A:ASN206 4.6 0.5 1.0
H A:ALA227 4.7 0.5 1.0
H A:GLY229 4.7 0.4 1.0
CA A:CYS204 4.7 0.3 1.0
C A:CYS207 4.8 0.5 1.0
HB3 A:ALA209 4.8 0.8 1.0
HB1 A:ALA209 4.9 0.9 1.0
CA A:ASN206 4.9 0.5 1.0
N A:ASN206 4.9 0.5 1.0
N A:ASN226 4.9 0.4 1.0
HB2 A:ASN206 4.9 0.8 1.0
HZ3 A:TRP215 4.9 0.4 1.0
ND2 A:ASN206 4.9 1.5 1.0
HA A:CYS207 5.0 0.6 1.0

Zinc binding site 2 out of 3 in 2l6y

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Zinc binding site 2 out of 3 in the Haddock Model of GATA1NF:LMO2LIM2-LDB1LID


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Haddock Model of GATA1NF:LMO2LIM2-LDB1LID within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn180

b:1.0
occ:1.00
ND1 B:HIS116 2.0 1.0 1.0
SG B:CYS94 2.3 1.0 1.0
SG B:CYS97 2.3 1.1 1.0
SG B:CYS119 2.3 1.0 1.0
HB2 B:HIS116 2.8 0.9 1.0
CE1 B:HIS116 2.9 1.1 1.0
HB2 B:CYS94 2.9 1.1 1.0
CG B:HIS116 3.0 1.0 1.0
HE1 B:HIS116 3.2 1.1 1.0
CB B:CYS94 3.2 1.0 1.0
H B:CYS97 3.2 1.1 1.0
HB3 B:CYS97 3.3 1.1 1.0
CB B:CYS97 3.4 1.2 1.0
CB B:HIS116 3.4 0.9 1.0
CB B:CYS119 3.4 0.9 1.0
HB2 B:CYS119 3.5 0.8 1.0
HB3 B:CYS94 3.5 1.1 1.0
H B:HIS116 3.6 0.8 1.0
HB3 B:CYS119 3.6 0.9 1.0
HB2 B:LYS99 3.7 1.2 1.0
N B:CYS97 3.9 1.1 1.0
HB2 B:SER96 3.9 1.1 1.0
NE2 B:HIS116 4.1 1.1 1.0
N B:HIS116 4.1 0.8 1.0
CD2 B:HIS116 4.1 1.0 1.0
CA B:CYS97 4.2 1.2 1.0
HB3 B:HIS116 4.2 0.9 1.0
H B:SER96 4.2 1.0 1.0
H B:LYS99 4.2 1.2 1.0
HB2 B:CYS97 4.3 1.2 1.0
CA B:HIS116 4.4 0.8 1.0
CA B:CYS94 4.6 1.0 1.0
H B:ALA95 4.6 1.0 1.0
HA B:TYR115 4.6 0.8 1.0
O B:LYS99 4.6 1.2 1.0
HA B:CYS94 4.7 1.0 1.0
HB3 B:TYR115 4.7 0.8 1.0
C B:CYS97 4.7 1.2 1.0
CB B:LYS99 4.8 1.3 1.0
CB B:SER96 4.8 1.0 1.0
HG2 B:GLU118 4.8 1.5 1.0
CA B:CYS119 4.8 0.8 1.0
C B:SER96 4.9 1.1 1.0
H B:CYS119 4.9 0.9 1.0
HE2 B:HIS116 4.9 1.2 1.0
C B:TYR115 5.0 0.8 1.0

Zinc binding site 3 out of 3 in 2l6y

Go back to Zinc Binding Sites List in 2l6y
Zinc binding site 3 out of 3 in the Haddock Model of GATA1NF:LMO2LIM2-LDB1LID


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Haddock Model of GATA1NF:LMO2LIM2-LDB1LID within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn181

b:0.3
occ:1.00
OD2 B:ASP147 2.0 0.3 1.0
SG B:CYS144 2.3 0.2 1.0
SG B:CYS122 2.3 0.4 1.0
SG B:CYS125 2.3 0.4 1.0
H B:CYS125 2.7 0.5 1.0
CG B:ASP147 2.8 0.3 1.0
HB3 B:CYS144 3.1 0.2 1.0
H B:CYS144 3.1 0.2 1.0
OD1 B:ASP147 3.2 0.3 1.0
HB2 B:CYS122 3.3 0.4 1.0
CB B:CYS122 3.3 0.5 1.0
HB3 B:CYS125 3.3 0.4 1.0
CB B:CYS144 3.3 0.2 1.0
CB B:CYS125 3.4 0.4 1.0
HB2 B:ALA124 3.5 0.5 1.0
HB3 B:CYS122 3.5 0.5 1.0
N B:CYS125 3.5 0.5 1.0
H B:ASP147 3.6 0.2 1.0
H B:GLN126 3.9 0.5 1.0
N B:CYS144 3.9 0.2 1.0
CA B:CYS125 3.9 0.5 1.0
HB3 B:GLN146 4.0 0.4 1.0
H B:ALA124 4.0 0.5 1.0
HG13 B:VAL143 4.1 0.4 1.0
CB B:ASP147 4.1 0.3 1.0
HB2 B:CYS144 4.1 0.2 1.0
H B:LYS127 4.1 0.5 1.0
HB3 B:ASP147 4.2 0.4 1.0
HE21 B:GLN146 4.2 1.8 1.0
CA B:CYS144 4.2 0.1 1.0
HB2 B:CYS125 4.3 0.5 1.0
HE22 B:GLN146 4.4 1.7 1.0
NE2 B:GLN146 4.4 1.4 1.0
H1 A:GLU200 4.4 2.2 1.0
N B:ASP147 4.4 0.2 1.0
H B:GLN146 4.5 0.2 1.0
CB B:ALA124 4.5 0.5 1.0
N B:GLN126 4.5 0.6 1.0
HB2 B:LYS127 4.6 0.5 1.0
C B:ALA124 4.6 0.6 1.0
C B:CYS125 4.6 0.6 1.0
HA B:VAL143 4.7 0.3 1.0
CA B:CYS122 4.7 0.5 1.0
HG11 B:VAL143 4.7 0.3 1.0
N B:ALA124 4.8 0.6 1.0
HG2 B:LYS127 4.8 0.8 1.0
CA B:ASP147 4.9 0.3 1.0
CA B:ALA124 4.9 0.6 1.0
HA B:CYS125 4.9 0.5 1.0
HB2 B:ASP147 4.9 0.4 1.0
CG1 B:VAL143 4.9 0.3 1.0
H B:ALA123 5.0 0.6 1.0
HA B:CYS122 5.0 0.5 1.0

Reference:

L.Wilkinson-White, R.Gamsjaeger, S.Dastmalchi, B.Wienert, P.H.Stokes, M.Crossley, J.P.Mackay, J.M.Matthews. Structural Basis of Simultaneous Recruitment of the Transcriptional Regulators LMO2 and FOG1/ZFPM1 By the Transcription Factor GATA1 Proc.Natl.Acad.Sci.Usa V. 108 14443 2011.
ISSN: ISSN 0027-8424
PubMed: 21844373
DOI: 10.1073/PNAS.1105898108
Page generated: Wed Dec 16 03:36:33 2020

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