Zinc in PDB 2l4l: Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc

The binding sites of Zinc atom in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc (pdb code 2l4l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc, PDB code: 2l4l:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn56 b:2.0 occ:7.00 NE2 A:HIS23 1.9 0.0 1.0 HB2 A:CYS28 1.9 0.0 1.0 HB2 A:CYS18 2.0 0.0 1.0 SG A:CYS15 2.0 0.0 1.0 HE1 A:HIS23 2.3 0.0 1.0 SG A:CYS18 2.3 0.0 1.0 SG A:CYS28 2.4 0.0 1.0 CE1 A:HIS23 2.4 0.0 1.0 HB3 A:CYS15 2.4 0.0 1.0 CB A:CYS15 2.5 0.0 1.0 CB A:CYS28 2.5 0.0 1.0 HB2 A:CYS15 2.6 0.0 1.0 CB A:CYS18 2.6 0.0 1.0 HB3 A:CYS28 3.1 0.0 1.0 CD2 A:HIS23 3.2 0.0 1.0 HB3 A:CYS18 3.2 0.0 1.0 HB3 A:LYS20 3.5 0.0 1.0 HA A:ALA25 3.7 0.0 1.0 ND1 A:HIS23 3.7 0.0 1.0 H A:CYS18 3.7 0.0 1.0 O A:LYS20 3.7 0.0 1.0 H A:LYS20 3.7 0.0 1.0 CA A:CYS18 3.7 0.0 1.0 HD2 A:HIS23 3.8 0.0 1.0 CA A:CYS28 3.8 0.0 1.0 HA A:CYS28 3.9 0.0 1.0 H A:GLY19 3.9 0.0 1.0 H A:CYS28 3.9 0.0 1.0 CA A:CYS15 4.0 0.0 1.0 CG A:HIS23 4.1 0.0 1.0 N A:CYS18 4.1 0.0 1.0 C A:CYS18 4.1 0.0 1.0 N A:GLY19 4.2 0.0 1.0 H A:CYS15 4.2 0.0 1.0 N A:LYS20 4.2 0.0 1.0 N A:CYS28 4.3 0.0 1.0 N A:ALA25 4.3 0.0 1.0 H A:ALA25 4.4 0.0 1.0 CA A:ALA25 4.4 0.0 1.0 HD1 A:HIS23 4.5 0.0 1.0 HA A:CYS15 4.5 0.0 1.0 CB A:LYS20 4.5 0.0 1.0 N A:CYS15 4.5 0.0 1.0 C A:LYS20 4.5 0.0 1.0 O A:ALA25 4.6 0.0 1.0 HA A:CYS18 4.6 0.0 1.0 CA A:LYS20 4.7 0.0 1.0 C A:THR24 4.7 0.0 1.0 HA A:THR24 4.8 0.0 1.0 C A:CYS15 4.8 0.0 1.0 HB1 A:ALA30 4.9 0.0 1.0 C A:ALA25 4.9 0.0 1.0 C A:CYS28 4.9 0.0 1.0 C A:GLY19 4.9 0.0 1.0 O A:CYS18 5.0 0.0 1.0 HB2 A:LYS20 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn57 b:2.0 occ:7.00 HB3 A:CYS49 1.8 0.0 1.0 HB2 A:CYS39 2.0 0.0 1.0 SG A:CYS36 2.1 0.0 1.0 NE2 A:HIS44 2.1 0.0 1.0 SG A:CYS49 2.3 0.0 1.0 CB A:CYS49 2.3 0.0 1.0 SG A:CYS39 2.5 0.0 1.0 HB3 A:CYS36 2.6 0.0 1.0 CB A:CYS39 2.6 0.0 1.0 CB A:CYS36 2.7 0.0 1.0 HB2 A:CYS49 2.7 0.0 1.0 HE1 A:HIS44 2.7 0.0 1.0 CE1 A:HIS44 2.7 0.0 1.0 HB2 A:LYS41 2.7 0.0 1.0 HB2 A:CYS36 2.8 0.0 1.0 HB3 A:CYS39 3.2 0.0 1.0 CD2 A:HIS44 3.3 0.0 1.0 H A:LYS41 3.7 0.0 1.0 CA A:CYS49 3.7 0.0 1.0 HD2 A:HIS44 3.8 0.0 1.0 CB A:LYS41 3.8 0.0 1.0 CA A:CYS39 3.8 0.0 1.0 H A:GLY40 4.0 0.0 1.0 H A:CYS49 4.0 0.0 1.0 ND1 A:HIS44 4.0 0.0 1.0 N A:LYS41 4.0 0.0 1.0 H A:CYS39 4.0 0.0 1.0 HD2 A:LYS41 4.1 0.0 1.0 C A:CYS39 4.1 0.0 1.0 O A:MET46 4.1 0.0 1.0 N A:GLY40 4.1 0.0 1.0 CA A:CYS36 4.1 0.0 1.0 H A:CYS36 4.2 0.0 1.0 O A:GLN45 4.2 0.0 1.0 HA A:MET46 4.2 0.0 1.0 C A:CYS49 4.3 0.0 1.0 CG A:HIS44 4.3 0.0 1.0 N A:CYS49 4.3 0.0 1.0 CA A:LYS41 4.3 0.0 1.0 HB3 A:LYS41 4.4 0.0 1.0 O A:LYS41 4.4 0.0 1.0 N A:CYS39 4.4 0.0 1.0 HG3 A:LYS41 4.4 0.0 1.0 HA A:CYS49 4.4 0.0 1.0 HB3 A:GLU51 4.5 0.0 1.0 C A:LYS41 4.5 0.0 1.0 CG A:LYS41 4.6 0.0 1.0 N A:CYS36 4.6 0.0 1.0 HA A:CYS39 4.7 0.0 1.0 C A:GLY40 4.7 0.0 1.0 H A:THR50 4.7 0.0 1.0 HA A:CYS36 4.7 0.0 1.0 N A:THR50 4.7 0.0 1.0 O A:CYS49 4.8 0.0 1.0 HD1 A:HIS44 4.8 0.0 1.0 O A:CYS39 4.8 0.0 1.0 CD A:LYS41 4.8 0.0 1.0 C A:MET46 4.9 0.0 1.0 C A:CYS36 4.9 0.0 1.0

A.Bazzi, L.Zargarian, F.Chaminade, C.Boudier, H.De Rocquigny, B.Rene, Y.Mely, P.Fosse, O.Mauffret. Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc. Nucleic Acids Res. V. 39 3903 2011.
ISSN: ISSN 0305-1048
PubMed: 21227929
DOI: 10.1093/NAR/GKQ1290