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Zinc in PDB 2l4l: Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc (pdb code 2l4l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc, PDB code: 2l4l:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2l4l

Go back to Zinc Binding Sites List in 2l4l
Zinc binding site 1 out of 2 in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn56

b:2.0
occ:7.00
NE2 A:HIS23 1.9 0.0 1.0
HB2 A:CYS28 1.9 0.0 1.0
HB2 A:CYS18 2.0 0.0 1.0
SG A:CYS15 2.0 0.0 1.0
HE1 A:HIS23 2.3 0.0 1.0
SG A:CYS18 2.3 0.0 1.0
SG A:CYS28 2.4 0.0 1.0
CE1 A:HIS23 2.4 0.0 1.0
HB3 A:CYS15 2.4 0.0 1.0
CB A:CYS15 2.5 0.0 1.0
CB A:CYS28 2.5 0.0 1.0
HB2 A:CYS15 2.6 0.0 1.0
CB A:CYS18 2.6 0.0 1.0
HB3 A:CYS28 3.1 0.0 1.0
CD2 A:HIS23 3.2 0.0 1.0
HB3 A:CYS18 3.2 0.0 1.0
HB3 A:LYS20 3.5 0.0 1.0
HA A:ALA25 3.7 0.0 1.0
ND1 A:HIS23 3.7 0.0 1.0
H A:CYS18 3.7 0.0 1.0
O A:LYS20 3.7 0.0 1.0
H A:LYS20 3.7 0.0 1.0
CA A:CYS18 3.7 0.0 1.0
HD2 A:HIS23 3.8 0.0 1.0
CA A:CYS28 3.8 0.0 1.0
HA A:CYS28 3.9 0.0 1.0
H A:GLY19 3.9 0.0 1.0
H A:CYS28 3.9 0.0 1.0
CA A:CYS15 4.0 0.0 1.0
CG A:HIS23 4.1 0.0 1.0
N A:CYS18 4.1 0.0 1.0
C A:CYS18 4.1 0.0 1.0
N A:GLY19 4.2 0.0 1.0
H A:CYS15 4.2 0.0 1.0
N A:LYS20 4.2 0.0 1.0
N A:CYS28 4.3 0.0 1.0
N A:ALA25 4.3 0.0 1.0
H A:ALA25 4.4 0.0 1.0
CA A:ALA25 4.4 0.0 1.0
HD1 A:HIS23 4.5 0.0 1.0
HA A:CYS15 4.5 0.0 1.0
CB A:LYS20 4.5 0.0 1.0
N A:CYS15 4.5 0.0 1.0
C A:LYS20 4.5 0.0 1.0
O A:ALA25 4.6 0.0 1.0
HA A:CYS18 4.6 0.0 1.0
CA A:LYS20 4.7 0.0 1.0
C A:THR24 4.7 0.0 1.0
HA A:THR24 4.8 0.0 1.0
C A:CYS15 4.8 0.0 1.0
HB1 A:ALA30 4.9 0.0 1.0
C A:ALA25 4.9 0.0 1.0
C A:CYS28 4.9 0.0 1.0
C A:GLY19 4.9 0.0 1.0
O A:CYS18 5.0 0.0 1.0
HB2 A:LYS20 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2l4l

Go back to Zinc Binding Sites List in 2l4l
Zinc binding site 2 out of 2 in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn57

b:2.0
occ:7.00
HB3 A:CYS49 1.8 0.0 1.0
HB2 A:CYS39 2.0 0.0 1.0
SG A:CYS36 2.1 0.0 1.0
NE2 A:HIS44 2.1 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
CB A:CYS49 2.3 0.0 1.0
SG A:CYS39 2.5 0.0 1.0
HB3 A:CYS36 2.6 0.0 1.0
CB A:CYS39 2.6 0.0 1.0
CB A:CYS36 2.7 0.0 1.0
HB2 A:CYS49 2.7 0.0 1.0
HE1 A:HIS44 2.7 0.0 1.0
CE1 A:HIS44 2.7 0.0 1.0
HB2 A:LYS41 2.7 0.0 1.0
HB2 A:CYS36 2.8 0.0 1.0
HB3 A:CYS39 3.2 0.0 1.0
CD2 A:HIS44 3.3 0.0 1.0
H A:LYS41 3.7 0.0 1.0
CA A:CYS49 3.7 0.0 1.0
HD2 A:HIS44 3.8 0.0 1.0
CB A:LYS41 3.8 0.0 1.0
CA A:CYS39 3.8 0.0 1.0
H A:GLY40 4.0 0.0 1.0
H A:CYS49 4.0 0.0 1.0
ND1 A:HIS44 4.0 0.0 1.0
N A:LYS41 4.0 0.0 1.0
H A:CYS39 4.0 0.0 1.0
HD2 A:LYS41 4.1 0.0 1.0
C A:CYS39 4.1 0.0 1.0
O A:MET46 4.1 0.0 1.0
N A:GLY40 4.1 0.0 1.0
CA A:CYS36 4.1 0.0 1.0
H A:CYS36 4.2 0.0 1.0
O A:GLN45 4.2 0.0 1.0
HA A:MET46 4.2 0.0 1.0
C A:CYS49 4.3 0.0 1.0
CG A:HIS44 4.3 0.0 1.0
N A:CYS49 4.3 0.0 1.0
CA A:LYS41 4.3 0.0 1.0
HB3 A:LYS41 4.4 0.0 1.0
O A:LYS41 4.4 0.0 1.0
N A:CYS39 4.4 0.0 1.0
HG3 A:LYS41 4.4 0.0 1.0
HA A:CYS49 4.4 0.0 1.0
HB3 A:GLU51 4.5 0.0 1.0
C A:LYS41 4.5 0.0 1.0
CG A:LYS41 4.6 0.0 1.0
N A:CYS36 4.6 0.0 1.0
HA A:CYS39 4.7 0.0 1.0
C A:GLY40 4.7 0.0 1.0
H A:THR50 4.7 0.0 1.0
HA A:CYS36 4.7 0.0 1.0
N A:THR50 4.7 0.0 1.0
O A:CYS49 4.8 0.0 1.0
HD1 A:HIS44 4.8 0.0 1.0
O A:CYS39 4.8 0.0 1.0
CD A:LYS41 4.8 0.0 1.0
C A:MET46 4.9 0.0 1.0
C A:CYS36 4.9 0.0 1.0

Reference:

A.Bazzi, L.Zargarian, F.Chaminade, C.Boudier, H.De Rocquigny, B.Rene, Y.Mely, P.Fosse, O.Mauffret. Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc. Nucleic Acids Res. V. 39 3903 2011.
ISSN: ISSN 0305-1048
PubMed: 21227929
DOI: 10.1093/NAR/GKQ1290
Page generated: Wed Dec 16 03:36:07 2020

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