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Zinc in PDB 2l46: C-Terminal Zinc Finger of the HIVNCP7 with Platinated Dna

Zinc Binding Sites:

The binding sites of Zinc atom in the C-Terminal Zinc Finger of the HIVNCP7 with Platinated Dna (pdb code 2l46). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the C-Terminal Zinc Finger of the HIVNCP7 with Platinated Dna, PDB code: 2l46:

Zinc binding site 1 out of 1 in 2l46

Go back to Zinc Binding Sites List in 2l46
Zinc binding site 1 out of 1 in the C-Terminal Zinc Finger of the HIVNCP7 with Platinated Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of C-Terminal Zinc Finger of the HIVNCP7 with Platinated Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn26

b:0.0
occ:1.00
SG A:CYS16 1.9 0.0 1.0
SG A:CYS3 2.0 0.0 1.0
SG A:CYS6 2.0 0.0 1.0
NE2 A:HIS11 2.0 0.0 1.0
CD2 A:HIS11 2.8 0.0 1.0
HB2 A:CYS16 2.9 0.0 1.0
CB A:CYS16 3.0 0.0 1.0
HD2 A:HIS11 3.0 0.0 1.0
H A:CYS6 3.0 0.0 1.0
CB A:CYS3 3.1 0.0 1.0
HB2 A:LYS5 3.2 0.0 1.0
HB3 A:CYS3 3.2 0.0 1.0
CE1 A:HIS11 3.2 0.0 1.0
HB2 A:LYS8 3.2 0.0 1.0
HB2 A:CYS3 3.3 0.0 1.0
HA A:CYS16 3.4 0.0 1.0
CB A:CYS6 3.5 0.0 1.0
H A:LYS8 3.5 0.0 1.0
HB3 A:CYS6 3.6 0.0 1.0
HE1 A:HIS11 3.6 0.0 1.0
H A:GLY7 3.7 0.0 1.0
CA A:CYS16 3.8 0.0 1.0
HB3 A:CYS16 3.8 0.0 1.0
N A:CYS6 3.9 0.0 1.0
CG A:HIS11 4.1 0.0 1.0
H A:THR17 4.1 0.0 1.0
ND1 A:HIS11 4.2 0.0 1.0
CB A:LYS5 4.2 0.0 1.0
HB2 A:CYS6 4.2 0.0 1.0
H A:LYS5 4.3 0.0 1.0
CA A:CYS6 4.3 0.0 1.0
CB A:LYS8 4.3 0.0 1.0
O A:LYS8 4.3 0.0 1.0
HD2 A:LYS8 4.4 0.0 1.0
HG3 A:GLU18 4.4 0.0 1.0
N A:LYS8 4.5 0.0 1.0
CA A:CYS3 4.5 0.0 1.0
N A:GLY7 4.6 0.0 1.0
HG2 A:LYS5 4.7 0.0 1.0
O A:GLN12 4.7 0.0 1.0
N A:CYS16 4.7 0.0 1.0
HG3 A:LYS5 4.8 0.0 1.0
HB3 A:LYS8 4.8 0.0 1.0
HB3 A:LYS5 4.8 0.0 1.0
HA A:CYS3 4.8 0.0 1.0
H A:GLU18 4.8 0.0 1.0
CA A:LYS8 4.8 0.0 1.0
N A:LYS5 4.8 0.0 1.0
CG A:LYS5 4.9 0.0 1.0
HA A:GLN12 4.9 0.0 1.0
HG3 A:LYS8 4.9 0.0 1.0
C A:LYS5 4.9 0.0 1.0
CA A:LYS5 4.9 0.0 1.0
N A:THR17 4.9 0.0 1.0
C A:CYS16 4.9 0.0 1.0
C A:CYS3 5.0 0.0 1.0
C A:CYS6 5.0 0.0 1.0

Reference:

S.Quintal, A.Viegas, S.Erhardt, E.J.Cabrita, N.P.Farrell. Platinated Dna Affects Zinc Finger Conformation. Interaction of A Platinated Single-Stranded Oligonucleotide and the C-Terminal Zinc Finger of Nucleocapsid Protein HIVNCP7. Biochemistry V. 51 1752 2012.
ISSN: ISSN 0006-2960
PubMed: 22303928
DOI: 10.1021/BI201834G
Page generated: Wed Dec 16 03:36:07 2020

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