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Zinc in PDB 2l43: Structural Basis For Histone Code Recognition By BRPF2-PHD1 Finger

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Basis For Histone Code Recognition By BRPF2-PHD1 Finger (pdb code 2l43). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Basis For Histone Code Recognition By BRPF2-PHD1 Finger, PDB code: 2l43:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2l43

Go back to Zinc Binding Sites List in 2l43
Zinc binding site 1 out of 2 in the Structural Basis For Histone Code Recognition By BRPF2-PHD1 Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For Histone Code Recognition By BRPF2-PHD1 Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn89

b:1.0
occ:1.00
ND1 A:HIS53 2.1 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
SG A:CYS56 2.3 0.0 1.0
HE1 A:HIS53 2.8 0.0 1.0
CE1 A:HIS53 2.8 0.0 1.0
HB3 A:CYS31 3.1 0.0 1.0
HB3 A:CYS28 3.2 0.0 1.0
CB A:CYS28 3.2 0.0 1.0
H A:CYS31 3.2 0.0 1.0
HB2 A:CYS56 3.2 0.0 1.0
CB A:CYS31 3.2 0.0 1.0
HB2 A:CYS28 3.3 0.0 1.0
CG A:HIS53 3.3 0.0 1.0
CB A:CYS56 3.3 0.0 1.0
HB2 A:HIS53 3.4 0.0 1.0
H A:HIS53 3.5 0.0 1.0
HB A:ILE30 3.5 0.0 1.0
HB3 A:CYS56 3.6 0.0 1.0
N A:CYS31 3.6 0.0 1.0
CB A:HIS53 3.9 0.0 1.0
CA A:CYS31 4.0 0.0 1.0
NE2 A:HIS53 4.1 0.0 1.0
HG21 A:ILE30 4.1 0.0 1.0
HB2 A:CYS31 4.1 0.0 1.0
HB3 A:SER36 4.2 0.0 1.0
O A:CYS31 4.3 0.0 1.0
CD2 A:HIS53 4.3 0.0 1.0
N A:HIS53 4.4 0.0 1.0
H A:ILE30 4.4 0.0 1.0
CB A:ILE30 4.4 0.0 1.0
HG A:SER36 4.4 0.0 1.0
C A:ILE30 4.5 0.0 1.0
C A:CYS31 4.5 0.0 1.0
OG A:SER36 4.5 0.0 1.0
CA A:CYS28 4.6 0.0 1.0
H A:ASP33 4.7 0.0 1.0
CG2 A:ILE30 4.7 0.0 1.0
HD13 A:ILE30 4.7 0.0 1.0
CA A:CYS56 4.7 0.0 1.0
HB3 A:HIS53 4.7 0.0 1.0
N A:ILE30 4.8 0.0 1.0
HA A:VAL52 4.8 0.0 1.0
CA A:HIS53 4.8 0.0 1.0
CA A:ILE30 4.8 0.0 1.0
HE2 A:HIS53 4.9 0.0 1.0
HD13 A:ILE42 4.9 0.0 1.0
HA A:CYS56 4.9 0.0 1.0
CB A:SER36 4.9 0.0 1.0
HA A:CYS31 4.9 0.0 1.0
HG22 A:ILE30 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2l43

Go back to Zinc Binding Sites List in 2l43
Zinc binding site 2 out of 2 in the Structural Basis For Histone Code Recognition By BRPF2-PHD1 Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis For Histone Code Recognition By BRPF2-PHD1 Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn90

b:1.0
occ:1.00
SG A:CYS48 2.3 0.0 1.0
SG A:CYS72 2.3 0.0 1.0
SG A:CYS45 2.3 0.0 1.0
SG A:CYS69 2.3 0.0 1.0
H A:CYS69 2.4 0.0 1.0
HB2 A:CYS48 2.8 0.0 1.0
HB3 A:CYS72 2.9 0.0 1.0
CB A:CYS48 3.2 0.0 1.0
N A:CYS69 3.2 0.0 1.0
CB A:CYS72 3.2 0.0 1.0
H A:CYS72 3.3 0.0 1.0
CB A:CYS69 3.4 0.0 1.0
HA A:LEU68 3.5 0.0 1.0
HB3 A:CYS69 3.5 0.0 1.0
CB A:CYS45 3.6 0.0 1.0
HB3 A:CYS45 3.7 0.0 1.0
HB2 A:CYS45 3.7 0.0 1.0
CA A:CYS69 3.8 0.0 1.0
HB3 A:CYS48 3.8 0.0 1.0
HB2 A:CYS72 3.9 0.0 1.0
HD12 A:LEU68 3.9 0.0 1.0
H A:MET47 4.0 0.0 1.0
N A:CYS72 4.1 0.0 1.0
C A:LEU68 4.1 0.0 1.0
O A:CYS69 4.1 0.0 1.0
N A:CYS48 4.2 0.0 1.0
HB3 A:MET47 4.2 0.0 1.0
CA A:CYS72 4.3 0.0 1.0
CA A:LEU68 4.3 0.0 1.0
HB3 A:HIS71 4.3 0.0 1.0
C A:CYS69 4.3 0.0 1.0
CA A:CYS48 4.3 0.0 1.0
HB2 A:CYS69 4.3 0.0 1.0
H A:CYS48 4.4 0.0 1.0
C A:MET47 4.5 0.0 1.0
H A:LEU73 4.5 0.0 1.0
HB3 A:LEU50 4.5 0.0 1.0
HB3 A:LEU68 4.6 0.0 1.0
HD13 A:LEU68 4.7 0.0 1.0
HB2 A:LEU50 4.7 0.0 1.0
HA A:CYS69 4.7 0.0 1.0
HB2 A:MET47 4.8 0.0 1.0
O A:MET47 4.8 0.0 1.0
CD1 A:LEU68 4.8 0.0 1.0
H A:HIS71 4.8 0.0 1.0
N A:MET47 4.8 0.0 1.0
O A:TRP67 4.9 0.0 1.0
CB A:MET47 4.9 0.0 1.0
CA A:CYS45 4.9 0.0 1.0
HA A:CYS72 5.0 0.0 1.0
HD21 A:LEU50 5.0 0.0 1.0
CB A:LEU68 5.0 0.0 1.0
H A:LEU50 5.0 0.0 1.0
HA A:CYS48 5.0 0.0 1.0
CA A:MET47 5.0 0.0 1.0

Reference:

S.Qin, J.Zhang, J.Wu, Y.Shi. Recognition of Unmodified Histone H3 By the First Phd Finger of Bromodomain-Phd Finger Protein 2 Provides Insights Into the Regulation of Histone Acetyltransferases Moz and Morf To Be Published.
Page generated: Wed Dec 16 03:36:10 2020

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