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Zinc in PDB 2l0z: Solution Structure of A Zinc-Binding Domain From the Junin Virus Envelope Glycoprotein

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of A Zinc-Binding Domain From the Junin Virus Envelope Glycoprotein (pdb code 2l0z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of A Zinc-Binding Domain From the Junin Virus Envelope Glycoprotein, PDB code: 2l0z:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2l0z

Go back to Zinc Binding Sites List in 2l0z
Zinc binding site 1 out of 2 in the Solution Structure of A Zinc-Binding Domain From the Junin Virus Envelope Glycoprotein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of A Zinc-Binding Domain From the Junin Virus Envelope Glycoprotein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn486

b:0.0
occ:1.00
NE2 A:HIS449 2.1 0.0 1.0
NE2 A:HIS485 2.1 0.0 1.0
NE2 A:HIS447 2.1 0.0 1.0
SG A:CYS455 2.3 0.0 1.0
CE1 A:HIS485 3.1 0.0 1.0
CE1 A:HIS449 3.1 0.0 1.0
CE1 A:HIS447 3.1 0.0 1.0
CD2 A:HIS485 3.1 0.0 1.0
CD2 A:HIS449 3.1 0.0 1.0
CD2 A:HIS447 3.1 0.0 1.0
HB2 A:CYS455 3.2 0.0 1.0
HE1 A:HIS449 3.3 0.0 1.0
HE1 A:HIS485 3.3 0.0 1.0
HE1 A:HIS447 3.3 0.0 1.0
HD2 A:HIS485 3.3 0.0 1.0
CB A:CYS455 3.3 0.0 1.0
HD2 A:HIS449 3.4 0.0 1.0
HD2 A:HIS447 3.4 0.0 1.0
HA A:CYS455 3.4 0.0 1.0
HG A:LEU457 3.7 0.0 1.0
HB2 A:ARG482 3.8 0.0 1.0
HB3 A:ARG482 3.9 0.0 1.0
HD2 A:PRO456 3.9 0.0 1.0
CA A:CYS455 4.0 0.0 1.0
HD13 A:LEU457 4.1 0.0 1.0
HD3 A:PRO456 4.1 0.0 1.0
HD12 A:LEU457 4.2 0.0 1.0
ND1 A:HIS485 4.2 0.0 1.0
ND1 A:HIS449 4.2 0.0 1.0
CG A:HIS485 4.2 0.0 1.0
ND1 A:HIS447 4.2 0.0 1.0
HB3 A:CYS455 4.3 0.0 1.0
CG A:HIS449 4.3 0.0 1.0
CG A:HIS447 4.3 0.0 1.0
CB A:ARG482 4.3 0.0 1.0
HG3 A:ARG482 4.3 0.0 1.0
CD A:PRO456 4.5 0.0 1.0
CD1 A:LEU457 4.5 0.0 1.0
CG A:LEU457 4.6 0.0 1.0
OXT A:HIS485 4.8 0.0 1.0
C A:CYS455 4.8 0.0 1.0
CG A:ARG482 4.9 0.0 1.0
H A:LEU457 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2l0z

Go back to Zinc Binding Sites List in 2l0z
Zinc binding site 2 out of 2 in the Solution Structure of A Zinc-Binding Domain From the Junin Virus Envelope Glycoprotein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of A Zinc-Binding Domain From the Junin Virus Envelope Glycoprotein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn487

b:0.0
occ:1.00
O A:CYS469 1.9 0.0 1.0
ND1 A:HIS459 2.1 0.0 1.0
SG A:CYS469 2.3 0.0 1.0
SG A:CYS467 2.3 0.0 1.0
HB3 A:LYS471 2.5 0.0 1.0
HB3 A:HIS459 2.9 0.0 1.0
HB2 A:LYS471 2.9 0.0 1.0
C A:CYS469 3.0 0.0 1.0
CE1 A:HIS459 3.1 0.0 1.0
HB2 A:CYS467 3.1 0.0 1.0
CB A:LYS471 3.1 0.0 1.0
CG A:HIS459 3.1 0.0 1.0
HE1 A:HIS459 3.3 0.0 1.0
CB A:CYS469 3.3 0.0 1.0
CB A:CYS467 3.4 0.0 1.0
HB2 A:CYS469 3.4 0.0 1.0
CB A:HIS459 3.5 0.0 1.0
O A:GLY470 3.6 0.0 1.0
CA A:CYS469 3.7 0.0 1.0
C A:GLY470 3.7 0.0 1.0
N A:LYS471 3.8 0.0 1.0
HB3 A:CYS467 4.0 0.0 1.0
HG2 A:LYS471 4.1 0.0 1.0
N A:GLY470 4.1 0.0 1.0
CA A:LYS471 4.1 0.0 1.0
H A:TYR472 4.2 0.0 1.0
H A:LYS471 4.2 0.0 1.0
HB2 A:HIS459 4.2 0.0 1.0
H A:CYS469 4.2 0.0 1.0
NE2 A:HIS459 4.2 0.0 1.0
CG A:LYS471 4.2 0.0 1.0
O A:CYS467 4.2 0.0 1.0
N A:CYS469 4.2 0.0 1.0
CD2 A:HIS459 4.3 0.0 1.0
HB3 A:CYS469 4.3 0.0 1.0
HA A:HIS459 4.4 0.0 1.0
CA A:GLY470 4.5 0.0 1.0
C A:CYS467 4.5 0.0 1.0
CA A:CYS467 4.6 0.0 1.0
HD2 A:TYR472 4.6 0.0 1.0
CA A:HIS459 4.6 0.0 1.0
HA A:CYS469 4.6 0.0 1.0
H A:ARG460 4.7 0.0 1.0
HG3 A:LYS471 4.8 0.0 1.0
HA A:LYS471 4.9 0.0 1.0
H A:GLY470 4.9 0.0 1.0
N A:TYR472 4.9 0.0 1.0

Reference:

K.Briknarova, C.J.Thomas, J.York, J.H.Nunberg. Structure of A Zinc-Binding Domain in the Junin Virus Envelope Glycoprotein. J.Biol.Chem. V. 286 1528 2011.
ISSN: ISSN 0021-9258
PubMed: 21068387
DOI: 10.1074/JBC.M110.166025
Page generated: Wed Dec 16 03:35:38 2020

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