Zinc in PDB 2k2c: Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A (pdb code 2k2c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A, PDB code: 2k2c:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn138 b:0.0 occ:1.00 NE2 A:HIS50 2.1 0.0 1.0 NE2 A:HIS44 2.1 0.0 1.0 SG A:CYS33 2.3 0.0 1.0 SG A:CYS34 2.4 0.0 1.0 CE1 A:HIS44 3.0 0.0 1.0 CD2 A:HIS50 3.0 0.0 1.0 CE1 A:HIS50 3.0 0.0 1.0 CD2 A:HIS44 3.2 0.0 1.0 HE1 A:HIS44 3.2 0.0 1.0 HD2 A:HIS50 3.3 0.0 1.0 HE1 A:HIS50 3.3 0.0 1.0 HG3 A:GLU48 3.3 0.0 1.0 HB1 A:ALA31 3.4 0.0 1.0 HB2 A:CYS33 3.4 0.0 1.0 HD2 A:HIS44 3.4 0.0 1.0 HB3 A:CYS34 3.4 0.0 1.0 CB A:CYS33 3.5 0.0 1.0 CB A:CYS34 3.6 0.0 1.0 HB2 A:ALA31 3.7 0.0 1.0 H A:CYS34 3.8 0.0 1.0 N A:CYS34 3.8 0.0 1.0 OE1 A:GLU48 3.9 0.0 1.0 CB A:ALA31 4.0 0.0 1.0 C A:CYS33 4.0 0.0 1.0 ND1 A:HIS50 4.1 0.0 1.0 CG A:HIS50 4.2 0.0 1.0 ND1 A:HIS44 4.2 0.0 1.0 CG A:GLU48 4.3 0.0 1.0 HB3 A:GLU48 4.3 0.0 1.0 CG A:HIS44 4.3 0.0 1.0 CA A:CYS33 4.3 0.0 1.0 CA A:CYS34 4.3 0.0 1.0 HB3 A:CYS33 4.4 0.0 1.0 HB2 A:CYS34 4.4 0.0 1.0 HB3 A:ALA31 4.5 0.0 1.0 HB2 A:LYS36 4.5 0.0 1.0 CD A:GLU48 4.5 0.0 1.0 H A:CYS33 4.6 0.0 1.0 O A:CYS33 4.6 0.0 1.0 CB A:GLU48 4.7 0.0 1.0 HB2 A:LEU52 4.8 0.0 1.0 O A:GLN51 4.8 0.0 1.0 HB2 A:GLU48 4.8 0.0 1.0 N A:CYS33 4.8 0.0 1.0 O A:ALA31 4.9 0.0 1.0 HD2 A:LYS36 4.9 0.0 1.0

Zinc binding site 2 out of 6 in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn139 b:0.0 occ:1.00 ND1 A:HIS22 2.1 0.0 1.0 SG A:CYS40 2.3 0.0 1.0 SG A:CYS20 2.4 0.0 1.0 SG A:CYS43 2.4 0.0 1.0 HB2 A:HIS22 2.8 0.0 1.0 CE1 A:HIS22 3.1 0.0 1.0 CG A:HIS22 3.1 0.0 1.0 HE1 A:HIS22 3.3 0.0 1.0 HB2 A:CYS40 3.3 0.0 1.0 CB A:HIS22 3.5 0.0 1.0 HB2 A:CYS43 3.5 0.0 1.0 H A:HIS22 3.5 0.0 1.0 HB3 A:CYS20 3.5 0.0 1.0 CB A:CYS40 3.5 0.0 1.0 CB A:CYS20 3.6 0.0 1.0 CB A:CYS43 3.6 0.0 1.0 HB A:THR39 3.8 0.0 1.0 HG2 A:GLU21 3.9 0.0 1.0 HB2 A:CYS20 4.0 0.0 1.0 HB3 A:CYS40 4.0 0.0 1.0 HG3 A:GLU21 4.2 0.0 1.0 HB3 A:HIS22 4.2 0.0 1.0 HB3 A:CYS43 4.2 0.0 1.0 NE2 A:HIS22 4.2 0.0 1.0 CD2 A:HIS22 4.2 0.0 1.0 N A:HIS22 4.3 0.0 1.0 HG A:LEU42 4.3 0.0 1.0 CA A:HIS22 4.5 0.0 1.0 HD2 A:TYR23 4.5 0.0 1.0 H A:CYS43 4.5 0.0 1.0 CG A:GLU21 4.6 0.0 1.0 H A:TYR23 4.6 0.0 1.0 H A:GLU21 4.6 0.0 1.0 H A:CYS40 4.7 0.0 1.0 N A:CYS40 4.8 0.0 1.0 CA A:CYS43 4.8 0.0 1.0 CA A:CYS40 4.8 0.0 1.0 CB A:THR39 4.8 0.0 1.0 N A:GLU21 4.9 0.0 1.0 CA A:CYS20 4.9 0.0 1.0 HD21 A:LEU42 4.9 0.0 1.0 N A:CYS43 4.9 0.0 1.0 HA A:CYS43 5.0 0.0 1.0

Zinc binding site 3 out of 6 in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn140 b:0.0 occ:1.00 SG A:CYS62 2.3 0.0 1.0 SG A:CYS75 2.3 0.0 1.0 SG A:CYS78 2.4 0.0 1.0 SG A:CYS65 2.4 0.0 1.0 O A:ASN64 2.8 0.0 1.0 OE1 A:GLU77 2.9 0.0 1.0 HB3 A:CYS62 3.2 0.0 1.0 OG1 A:THR80 3.4 0.0 1.0 CB A:CYS62 3.4 0.0 1.0 HB3 A:CYS65 3.4 0.0 1.0 H A:CYS78 3.4 0.0 1.0 CB A:CYS75 3.4 0.0 1.0 HB3 A:CYS75 3.5 0.0 1.0 HB2 A:CYS75 3.5 0.0 1.0 CB A:CYS65 3.6 0.0 1.0 HB3 A:CYS78 3.6 0.0 1.0 CB A:CYS78 3.6 0.0 1.0 HB2 A:CYS62 3.7 0.0 1.0 C A:ASN64 3.8 0.0 1.0 HB3 A:LYS67 3.8 0.0 1.0 HB A:THR80 3.8 0.0 1.0 HD21 A:ASN64 3.8 0.0 1.0 HB3 A:GLU77 4.0 0.0 1.0 N A:CYS78 4.1 0.0 1.0 HG1 A:THR80 4.1 0.0 1.0 CD A:GLU77 4.2 0.0 1.0 H A:LYS67 4.2 0.0 1.0 CB A:THR80 4.2 0.0 1.0 HB3 A:ASN64 4.2 0.0 1.0 HB2 A:LYS67 4.2 0.0 1.0 H A:THR80 4.3 0.0 1.0 CA A:CYS78 4.3 0.0 1.0 N A:CYS65 4.3 0.0 1.0 HB2 A:CYS65 4.3 0.0 1.0 HB2 A:CYS78 4.5 0.0 1.0 CA A:CYS65 4.5 0.0 1.0 H A:GLU66 4.5 0.0 1.0 CB A:LYS67 4.5 0.0 1.0 O A:CYS62 4.7 0.0 1.0 HE1 A:PHE82 4.7 0.0 1.0 HG22 A:THR80 4.7 0.0 1.0 CA A:CYS62 4.7 0.0 1.0 ND2 A:ASN64 4.8 0.0 1.0 C A:CYS78 4.8 0.0 1.0 CA A:ASN64 4.9 0.0 1.0 CA A:CYS75 4.9 0.0 1.0 OE2 A:GLU77 4.9 0.0 1.0 CB A:GLU77 4.9 0.0 1.0 C A:CYS62 5.0 0.0 1.0 CB A:ASN64 5.0 0.0 1.0 H A:ASN64 5.0 0.0 1.0

Zinc binding site 4 out of 6 in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn141 b:0.0 occ:1.00 ND1 A:HIS101 2.1 0.0 1.0 SG A:CYS87 2.3 0.0 1.0 SG A:CYS90 2.3 0.0 1.0 SG A:CYS108 2.4 0.0 1.0 H A:CYS108 2.9 0.0 1.0 CE1 A:HIS101 3.0 0.0 1.0 HB2 A:HIS101 3.1 0.0 1.0 CG A:HIS101 3.2 0.0 1.0 HE1 A:HIS101 3.2 0.0 1.0 HB2 A:CYS90 3.2 0.0 1.0 N A:CYS108 3.3 0.0 1.0 HA A:ILE107 3.4 0.0 1.0 HB3 A:CYS87 3.4 0.0 1.0 CB A:CYS87 3.4 0.0 1.0 CB A:CYS90 3.5 0.0 1.0 CB A:CYS108 3.6 0.0 1.0 HB2 A:CYS87 3.6 0.0 1.0 CB A:HIS101 3.7 0.0 1.0 HB3 A:CYS108 3.7 0.0 1.0 C A:ILE107 3.9 0.0 1.0 HD23 A:LEU92 3.9 0.0 1.0 H A:CYS90 3.9 0.0 1.0 HE1 A:TYR85 4.1 0.0 1.0 CA A:CYS108 4.1 0.0 1.0 HB3 A:CYS90 4.1 0.0 1.0 CA A:ILE107 4.1 0.0 1.0 HA A:HIS101 4.1 0.0 1.0 NE2 A:HIS101 4.2 0.0 1.0 CD2 A:HIS101 4.3 0.0 1.0 HG A:LEU92 4.5 0.0 1.0 HB2 A:CYS108 4.5 0.0 1.0 HB A:ILE89 4.5 0.0 1.0 HB3 A:HIS101 4.5 0.0 1.0 N A:CYS90 4.5 0.0 1.0 CA A:HIS101 4.6 0.0 1.0 O A:ILE107 4.6 0.0 1.0 CA A:CYS90 4.6 0.0 1.0 HD21 A:LEU92 4.7 0.0 1.0 CD2 A:LEU92 4.7 0.0 1.0 HH A:TYR85 4.7 0.0 1.0 CA A:CYS87 4.8 0.0 1.0 HA A:CYS108 4.8 0.0 1.0 HB A:ILE107 4.9 0.0 1.0 HD13 A:LEU92 5.0 0.0 1.0 O A:CYS108 5.0 0.0 1.0

Zinc binding site 5 out of 6 in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn142 b:0.0 occ:1.00 ND1 A:HIS118 2.1 0.0 1.0 SG A:CYS102 2.3 0.0 1.0 SG A:CYS105 2.3 0.0 1.0 SG A:CYS125 2.4 0.0 1.0 HB2 A:HIS118 2.9 0.0 1.0 CE1 A:HIS118 3.0 0.0 1.0 CG A:HIS118 3.1 0.0 1.0 HE1 A:HIS118 3.2 0.0 1.0 HB2 A:CYS105 3.4 0.0 1.0 H A:CYS105 3.4 0.0 1.0 CB A:HIS118 3.4 0.0 1.0 CB A:CYS102 3.5 0.0 1.0 HB3 A:CYS102 3.5 0.0 1.0 CB A:CYS105 3.5 0.0 1.0 HB2 A:CYS125 3.6 0.0 1.0 CB A:CYS125 3.6 0.0 1.0 HB2 A:CYS102 3.6 0.0 1.0 HA A:HIS118 3.6 0.0 1.0 O A:LEU124 4.0 0.0 1.0 N A:CYS105 4.1 0.0 1.0 HB3 A:ASN104 4.1 0.0 1.0 C A:LEU124 4.1 0.0 1.0 CA A:HIS118 4.1 0.0 1.0 HA A:CYS125 4.2 0.0 1.0 NE2 A:HIS118 4.2 0.0 1.0 CD2 A:HIS118 4.2 0.0 1.0 N A:CYS125 4.2 0.0 1.0 HE2 A:TYR100 4.2 0.0 1.0 CA A:CYS125 4.3 0.0 1.0 HB3 A:CYS105 4.3 0.0 1.0 HB3 A:HIS118 4.4 0.0 1.0 CA A:CYS105 4.4 0.0 1.0 HB3 A:CYS125 4.5 0.0 1.0 H A:CYS125 4.7 0.0 1.0 HA A:LEU124 4.8 0.0 1.0 HA A:CYS105 4.8 0.0 1.0 H A:ASN104 4.8 0.0 1.0 CA A:CYS102 4.9 0.0 1.0 CA A:LEU124 4.9 0.0 1.0 N A:HIS118 5.0 0.0 1.0 N A:LEU124 5.0 0.0 1.0

Zinc binding site 6 out of 6 in the Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Solution uc(Nmr) Structure of N-Terminal Domain of Human PIRH2. Northeast Structural Genomics Consortium (Nesg) Target HT2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn143 b:0.0 occ:1.00 ND1 A:HIS134 2.1 0.0 1.0 SG A:CYS122 2.3 0.0 1.0 SG A:CYS119 2.4 0.0 1.0 SG A:CYS136 2.4 0.0 1.0 HB2 A:HIS134 2.8 0.0 1.0 CE1 A:HIS134 3.0 0.0 1.0 CG A:HIS134 3.1 0.0 1.0 HE1 A:HIS134 3.3 0.0 1.0 HB2 A:CYS122 3.3 0.0 1.0 HB3 A:CYS119 3.4 0.0 1.0 CB A:HIS134 3.4 0.0 1.0 CB A:CYS122 3.5 0.0 1.0 HB3 A:CYS136 3.6 0.0 1.0 CB A:CYS119 3.6 0.0 1.0 CB A:CYS136 3.6 0.0 1.0 HB3 A:CYS122 3.9 0.0 1.0 O A:GLY132 3.9 0.0 1.0 HB3 A:HIS134 3.9 0.0 1.0 HA2 A:GLY132 4.0 0.0 1.0 HA A:CYS136 4.0 0.0 1.0 HB2 A:CYS119 4.0 0.0 1.0 NE2 A:HIS134 4.2 0.0 1.0 CD2 A:HIS134 4.2 0.0 1.0 CA A:CYS136 4.4 0.0 1.0 HA3 A:GLY132 4.4 0.0 1.0 HB2 A:CYS136 4.5 0.0 1.0 C A:GLY132 4.5 0.0 1.0 CA A:GLY132 4.5 0.0 1.0 HD22 A:LEU126 4.6 0.0 1.0 CA A:HIS134 4.8 0.0 1.0 CA A:CYS122 4.8 0.0 1.0 HA A:CYS122 4.8 0.0 1.0 H A:HIS134 4.8 0.0 1.0 HD11 A:LEU124 4.9 0.0 1.0 CA A:CYS119 4.9 0.0 1.0 O A:LYS121 4.9 0.0 1.0 N A:HIS134 4.9 0.0 1.0 HD21 A:LEU126 5.0 0.0 1.0 HE2 A:HIS134 5.0 0.0 1.0 N A:CYS136 5.0 0.0 1.0

Y.Sheng, R.C.Laister, A.Lemak, B.Wu, E.Tai, S.Duan, J.Lukin, M.Sunnerhagen, S.Srisailam, M.Karra, S.Benchimol, C.H.Arrowsmith. Molecular Basis of PIRH2-Mediated P53 Ubiquitylation. Nat.Struct.Mol.Biol. V. 15 1334 2008.
ISSN: ISSN 1545-9993
PubMed: 19043414
DOI: 10.1038/NSMB.1521