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Zinc in PDB 2k17: Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide (pdb code 2k17). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide, PDB code: 2k17:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2k17

Go back to Zinc Binding Sites List in 2k17
Zinc binding site 1 out of 2 in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn940

b:0.0
occ:1.00
SG A:CYS911 2.2 0.0 1.0
SG A:CYS914 2.3 0.0 1.0
SG A:CYS885 2.3 0.0 1.0
SG A:CYS888 2.3 0.0 1.0
HB2 A:CYS914 2.7 0.0 1.0
H A:CYS888 2.8 0.0 1.0
CB A:CYS914 3.1 0.0 1.0
H A:CYS911 3.1 0.0 1.0
CB A:CYS885 3.1 0.0 1.0
HB3 A:CYS885 3.1 0.0 1.0
HB2 A:CYS885 3.2 0.0 1.0
HB2 A:LYS913 3.2 0.0 1.0
H A:CYS914 3.3 0.0 1.0
HB3 A:CYS888 3.3 0.0 1.0
CB A:CYS888 3.4 0.0 1.0
HD3 A:LYS913 3.5 0.0 1.0
HB3 A:ASP887 3.6 0.0 1.0
HZ1 A:LYS913 3.6 0.0 1.0
N A:CYS888 3.7 0.0 1.0
CB A:CYS911 3.7 0.0 1.0
HB3 A:CYS911 3.8 0.0 1.0
HB3 A:CYS914 3.8 0.0 1.0
N A:CYS914 3.9 0.0 1.0
HE2 A:LYS913 4.0 0.0 1.0
N A:CYS911 4.0 0.0 1.0
H A:ASP887 4.1 0.0 1.0
CA A:CYS914 4.1 0.0 1.0
CA A:CYS888 4.1 0.0 1.0
CB A:LYS913 4.3 0.0 1.0
H A:ASP890 4.3 0.0 1.0
HB2 A:CYS888 4.3 0.0 1.0
HA A:PHE910 4.3 0.0 1.0
CD A:LYS913 4.4 0.0 1.0
H A:ASP889 4.4 0.0 1.0
CA A:CYS911 4.4 0.0 1.0
HB2 A:CYS911 4.4 0.0 1.0
CE A:LYS913 4.5 0.0 1.0
NZ A:LYS913 4.5 0.0 1.0
HB3 A:PHE910 4.6 0.0 1.0
HD1 A:PHE910 4.6 0.0 1.0
CA A:CYS885 4.6 0.0 1.0
HB2 A:ASP890 4.6 0.0 1.0
CB A:ASP887 4.6 0.0 1.0
HA A:CYS914 4.6 0.0 1.0
HB3 A:LYS913 4.6 0.0 1.0
HB3 A:ASP890 4.7 0.0 1.0
H A:LYS913 4.7 0.0 1.0
C A:ASP887 4.8 0.0 1.0
HE1 A:TYR892 4.8 0.0 1.0
N A:ASP887 4.8 0.0 1.0
O A:CYS911 4.9 0.0 1.0
CG A:LYS913 4.9 0.0 1.0
C A:LYS913 4.9 0.0 1.0
N A:ASP889 4.9 0.0 1.0
CA A:ASP887 5.0 0.0 1.0
HA A:CYS885 5.0 0.0 1.0
C A:CYS888 5.0 0.0 1.0
C A:PHE910 5.0 0.0 1.0
C A:CYS911 5.0 0.0 1.0
HA A:CYS888 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2k17

Go back to Zinc Binding Sites List in 2k17
Zinc binding site 2 out of 2 in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn941

b:0.0
occ:1.00
ND1 A:HIS893 2.1 0.0 1.0
SG A:CYS873 2.3 0.0 1.0
SG A:CYS896 2.3 0.0 1.0
HB2 A:HIS893 2.5 0.0 1.0
HB3 A:CYS870 2.7 0.0 1.0
SG A:CYS870 2.7 0.0 1.0
CG A:HIS893 3.0 0.0 1.0
CB A:CYS870 3.1 0.0 1.0
CE1 A:HIS893 3.2 0.0 1.0
HB2 A:CYS870 3.2 0.0 1.0
CB A:HIS893 3.2 0.0 1.0
HB3 A:CYS873 3.3 0.0 1.0
H A:CYS873 3.4 0.0 1.0
H A:HIS893 3.4 0.0 1.0
CB A:CYS896 3.4 0.0 1.0
HE1 A:HIS893 3.5 0.0 1.0
CB A:CYS873 3.5 0.0 1.0
HB3 A:CYS896 3.6 0.0 1.0
HB2 A:CYS896 3.6 0.0 1.0
HB2 A:LYS875 3.6 0.0 1.0
HB3 A:HIS893 4.0 0.0 1.0
N A:CYS873 4.1 0.0 1.0
N A:HIS893 4.2 0.0 1.0
HB2 A:CYS873 4.2 0.0 1.0
HD2 A:LYS875 4.2 0.0 1.0
CD2 A:HIS893 4.2 0.0 1.0
H A:LYS875 4.2 0.0 1.0
NE2 A:HIS893 4.3 0.0 1.0
CA A:HIS893 4.3 0.0 1.0
CA A:CYS873 4.5 0.0 1.0
HA3 A:GLY872 4.5 0.0 1.0
CA A:CYS870 4.6 0.0 1.0
H A:GLY872 4.7 0.0 1.0
CB A:LYS875 4.7 0.0 1.0
HG2 A:PRO895 4.8 0.0 1.0
H A:ASN874 4.8 0.0 1.0
O A:LYS875 4.8 0.0 1.0
CA A:CYS896 4.8 0.0 1.0
H A:CYS896 4.9 0.0 1.0
O A:CYS870 4.9 0.0 1.0
H A:CYS870 4.9 0.0 1.0

Reference:

H.Van Ingen, F.M.A.Van Schaik, H.Wienk, J.Ballering, A.Deschesne, J.Kruijzer, H.Timmers, R.Boelens. Recognition of the H3K4ME3 Mark By the TAF3-Phd Finger To Be Published.
Page generated: Wed Dec 16 03:33:20 2020

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