Zinc in PDB 2k17: Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide

The binding sites of Zinc atom in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide (pdb code 2k17). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide, PDB code: 2k17:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn940 b:0.0 occ:1.00 SG A:CYS911 2.2 0.0 1.0 SG A:CYS914 2.3 0.0 1.0 SG A:CYS885 2.3 0.0 1.0 SG A:CYS888 2.3 0.0 1.0 HB2 A:CYS914 2.7 0.0 1.0 H A:CYS888 2.8 0.0 1.0 CB A:CYS914 3.1 0.0 1.0 H A:CYS911 3.1 0.0 1.0 CB A:CYS885 3.1 0.0 1.0 HB3 A:CYS885 3.1 0.0 1.0 HB2 A:CYS885 3.2 0.0 1.0 HB2 A:LYS913 3.2 0.0 1.0 H A:CYS914 3.3 0.0 1.0 HB3 A:CYS888 3.3 0.0 1.0 CB A:CYS888 3.4 0.0 1.0 HD3 A:LYS913 3.5 0.0 1.0 HB3 A:ASP887 3.6 0.0 1.0 HZ1 A:LYS913 3.6 0.0 1.0 N A:CYS888 3.7 0.0 1.0 CB A:CYS911 3.7 0.0 1.0 HB3 A:CYS911 3.8 0.0 1.0 HB3 A:CYS914 3.8 0.0 1.0 N A:CYS914 3.9 0.0 1.0 HE2 A:LYS913 4.0 0.0 1.0 N A:CYS911 4.0 0.0 1.0 H A:ASP887 4.1 0.0 1.0 CA A:CYS914 4.1 0.0 1.0 CA A:CYS888 4.1 0.0 1.0 CB A:LYS913 4.3 0.0 1.0 H A:ASP890 4.3 0.0 1.0 HB2 A:CYS888 4.3 0.0 1.0 HA A:PHE910 4.3 0.0 1.0 CD A:LYS913 4.4 0.0 1.0 H A:ASP889 4.4 0.0 1.0 CA A:CYS911 4.4 0.0 1.0 HB2 A:CYS911 4.4 0.0 1.0 CE A:LYS913 4.5 0.0 1.0 NZ A:LYS913 4.5 0.0 1.0 HB3 A:PHE910 4.6 0.0 1.0 HD1 A:PHE910 4.6 0.0 1.0 CA A:CYS885 4.6 0.0 1.0 HB2 A:ASP890 4.6 0.0 1.0 CB A:ASP887 4.6 0.0 1.0 HA A:CYS914 4.6 0.0 1.0 HB3 A:LYS913 4.6 0.0 1.0 HB3 A:ASP890 4.7 0.0 1.0 H A:LYS913 4.7 0.0 1.0 C A:ASP887 4.8 0.0 1.0 HE1 A:TYR892 4.8 0.0 1.0 N A:ASP887 4.8 0.0 1.0 O A:CYS911 4.9 0.0 1.0 CG A:LYS913 4.9 0.0 1.0 C A:LYS913 4.9 0.0 1.0 N A:ASP889 4.9 0.0 1.0 CA A:ASP887 5.0 0.0 1.0 HA A:CYS885 5.0 0.0 1.0 C A:CYS888 5.0 0.0 1.0 C A:PHE910 5.0 0.0 1.0 C A:CYS911 5.0 0.0 1.0 HA A:CYS888 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the TAF3 Phd Domain in Complex with A H3K4ME3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn941 b:0.0 occ:1.00 ND1 A:HIS893 2.1 0.0 1.0 SG A:CYS873 2.3 0.0 1.0 SG A:CYS896 2.3 0.0 1.0 HB2 A:HIS893 2.5 0.0 1.0 HB3 A:CYS870 2.7 0.0 1.0 SG A:CYS870 2.7 0.0 1.0 CG A:HIS893 3.0 0.0 1.0 CB A:CYS870 3.1 0.0 1.0 CE1 A:HIS893 3.2 0.0 1.0 HB2 A:CYS870 3.2 0.0 1.0 CB A:HIS893 3.2 0.0 1.0 HB3 A:CYS873 3.3 0.0 1.0 H A:CYS873 3.4 0.0 1.0 H A:HIS893 3.4 0.0 1.0 CB A:CYS896 3.4 0.0 1.0 HE1 A:HIS893 3.5 0.0 1.0 CB A:CYS873 3.5 0.0 1.0 HB3 A:CYS896 3.6 0.0 1.0 HB2 A:CYS896 3.6 0.0 1.0 HB2 A:LYS875 3.6 0.0 1.0 HB3 A:HIS893 4.0 0.0 1.0 N A:CYS873 4.1 0.0 1.0 N A:HIS893 4.2 0.0 1.0 HB2 A:CYS873 4.2 0.0 1.0 HD2 A:LYS875 4.2 0.0 1.0 CD2 A:HIS893 4.2 0.0 1.0 H A:LYS875 4.2 0.0 1.0 NE2 A:HIS893 4.3 0.0 1.0 CA A:HIS893 4.3 0.0 1.0 CA A:CYS873 4.5 0.0 1.0 HA3 A:GLY872 4.5 0.0 1.0 CA A:CYS870 4.6 0.0 1.0 H A:GLY872 4.7 0.0 1.0 CB A:LYS875 4.7 0.0 1.0 HG2 A:PRO895 4.8 0.0 1.0 H A:ASN874 4.8 0.0 1.0 O A:LYS875 4.8 0.0 1.0 CA A:CYS896 4.8 0.0 1.0 H A:CYS896 4.9 0.0 1.0 O A:CYS870 4.9 0.0 1.0 H A:CYS870 4.9 0.0 1.0

H.Van Ingen, F.M.A.Van Schaik, H.Wienk, J.Ballering, A.Deschesne, J.Kruijzer, H.Timmers, R.Boelens. Recognition of the H3K4ME3 Mark By the TAF3-Phd Finger To Be Published.