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Zinc in PDB 2k0a: 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein (pdb code 2k0a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein, PDB code: 2k0a:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2k0a

Go back to Zinc Binding Sites List in 2k0a
Zinc binding site 1 out of 3 in the 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn108

b:0.0
occ:1.00
SG A:CYS46 2.3 0.0 1.0
SG A:CYS11 2.3 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
SG A:CYS86 2.3 0.0 1.0
HB2 A:CYS49 3.1 0.0 1.0
HB3 A:CYS11 3.2 0.0 1.0
H A:CYS46 3.2 0.0 1.0
HB3 A:CYS46 3.2 0.0 1.0
CB A:CYS11 3.3 0.0 1.0
HB3 A:CYS86 3.3 0.0 1.0
CB A:CYS86 3.3 0.0 1.0
CB A:CYS46 3.4 0.0 1.0
CB A:CYS49 3.4 0.0 1.0
HB2 A:CYS86 3.4 0.0 1.0
HB2 A:CYS11 3.6 0.0 1.0
H A:CYS49 3.6 0.0 1.0
HD2 A:ARG88 3.7 0.0 1.0
HB2 A:ARG88 3.8 0.0 1.0
HB2 A:LYS13 3.8 0.0 1.0
N A:CYS46 3.8 0.0 1.0
HG3 A:LYS13 4.0 0.0 1.0
HB2 A:ASN48 4.0 0.0 1.0
N A:CYS49 4.1 0.0 1.0
CA A:CYS46 4.1 0.0 1.0
HE2 A:LYS13 4.1 0.0 1.0
HD2 A:LYS13 4.2 0.0 1.0
HB3 A:CYS49 4.2 0.0 1.0
H A:LYS13 4.2 0.0 1.0
HB A:VAL45 4.2 0.0 1.0
HB2 A:CYS46 4.2 0.0 1.0
O A:CYS46 4.3 0.0 1.0
CA A:CYS49 4.3 0.0 1.0
HG3 A:ARG88 4.4 0.0 1.0
C A:CYS46 4.5 0.0 1.0
CG A:LYS13 4.6 0.0 1.0
HA A:CYS49 4.7 0.0 1.0
CD A:ARG88 4.7 0.0 1.0
CA A:CYS11 4.7 0.0 1.0
CB A:LYS13 4.7 0.0 1.0
CB A:ARG88 4.7 0.0 1.0
CD A:LYS13 4.8 0.0 1.0
CA A:CYS86 4.8 0.0 1.0
CG A:ARG88 4.8 0.0 1.0
HB3 A:ASN48 4.9 0.0 1.0
H A:ARG88 4.9 0.0 1.0
HA A:VAL45 4.9 0.0 1.0
CE A:LYS13 4.9 0.0 1.0
CB A:ASN48 4.9 0.0 1.0
C A:VAL45 4.9 0.0 1.0
C A:ASN48 5.0 0.0 1.0

Zinc binding site 2 out of 3 in 2k0a

Go back to Zinc Binding Sites List in 2k0a
Zinc binding site 2 out of 3 in the 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn109

b:0.0
occ:1.00
SG A:CYS26 2.3 0.0 1.0
SG A:CYS58 2.3 0.0 1.0
SG A:CYS61 2.3 0.0 1.0
SG A:CYS23 2.3 0.0 1.0
HB2 A:CYS26 3.1 0.0 1.0
H A:CYS61 3.1 0.0 1.0
H A:CYS23 3.2 0.0 1.0
HB3 A:CYS58 3.2 0.0 1.0
HB3 A:CYS61 3.2 0.0 1.0
HB3 A:CYS23 3.3 0.0 1.0
CB A:CYS58 3.3 0.0 1.0
CB A:CYS26 3.3 0.0 1.0
CB A:CYS61 3.4 0.0 1.0
CB A:CYS23 3.4 0.0 1.0
HB2 A:CYS58 3.5 0.0 1.0
HB2 A:LYS25 3.7 0.0 1.0
H A:CYS26 3.7 0.0 1.0
HB A:ILE60 3.7 0.0 1.0
N A:CYS61 3.8 0.0 1.0
N A:CYS26 4.0 0.0 1.0
N A:CYS23 4.0 0.0 1.0
HB2 A:ASN64 4.1 0.0 1.0
HB3 A:CYS26 4.1 0.0 1.0
CA A:CYS61 4.1 0.0 1.0
CA A:CYS23 4.2 0.0 1.0
HB2 A:CYS61 4.3 0.0 1.0
HB2 A:CYS23 4.3 0.0 1.0
CA A:CYS26 4.3 0.0 1.0
O A:CYS23 4.4 0.0 1.0
HG21 A:ILE60 4.5 0.0 1.0
H A:ILE60 4.6 0.0 1.0
C A:CYS23 4.6 0.0 1.0
C A:LYS25 4.7 0.0 1.0
CB A:ILE60 4.7 0.0 1.0
CA A:CYS58 4.7 0.0 1.0
HD21 A:LEU22 4.7 0.0 1.0
CB A:LYS25 4.8 0.0 1.0
HA A:LEU22 4.8 0.0 1.0
C A:ILE60 4.8 0.0 1.0
H A:LYS25 4.8 0.0 1.0
H A:ASN64 4.8 0.0 1.0
HD3 A:LYS25 4.8 0.0 1.0
C A:CYS61 4.9 0.0 1.0
HA A:CYS26 4.9 0.0 1.0

Zinc binding site 3 out of 3 in 2k0a

Go back to Zinc Binding Sites List in 2k0a
Zinc binding site 3 out of 3 in the 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 1H, 15N and 13C Chemical Shift Assignments For RDS3 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn110

b:0.0
occ:1.00
SG A:CYS73 2.3 0.0 1.0
SG A:CYS76 2.3 0.0 1.0
SG A:CYS30 2.3 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
HB2 A:CYS76 3.1 0.0 1.0
HB3 A:CYS73 3.2 0.0 1.0
HB A:ILE32 3.2 0.0 1.0
HB3 A:CYS30 3.2 0.0 1.0
HB3 A:CYS33 3.2 0.0 1.0
CB A:CYS30 3.3 0.0 1.0
CB A:CYS76 3.4 0.0 1.0
CB A:CYS73 3.4 0.0 1.0
CB A:CYS33 3.4 0.0 1.0
H A:CYS73 3.4 0.0 1.0
H A:CYS76 3.5 0.0 1.0
H A:CYS33 3.5 0.0 1.0
HB2 A:CYS30 3.6 0.0 1.0
N A:CYS33 3.9 0.0 1.0
H A:ASP34 4.1 0.0 1.0
N A:CYS76 4.1 0.0 1.0
N A:CYS73 4.1 0.0 1.0
HB2 A:GLU75 4.1 0.0 1.0
HB3 A:CYS76 4.1 0.0 1.0
HB2 A:CYS73 4.2 0.0 1.0
CA A:CYS33 4.2 0.0 1.0
HB2 A:CYS33 4.2 0.0 1.0
CA A:CYS73 4.2 0.0 1.0
CB A:ILE32 4.2 0.0 1.0
CA A:CYS76 4.3 0.0 1.0
H A:ILE32 4.5 0.0 1.0
O A:CYS73 4.5 0.0 1.0
HG11 A:VAL37 4.6 0.0 1.0
HG23 A:ILE32 4.6 0.0 1.0
C A:ILE32 4.6 0.0 1.0
HA A:CYS76 4.6 0.0 1.0
CA A:CYS30 4.7 0.0 1.0
HG13 A:ILE32 4.7 0.0 1.0
C A:CYS73 4.7 0.0 1.0
N A:ASP34 4.7 0.0 1.0
HG12 A:VAL37 4.8 0.0 1.0
CA A:ILE32 4.8 0.0 1.0
N A:ILE32 4.9 0.0 1.0
C A:CYS33 5.0 0.0 1.0
C A:CYS30 5.0 0.0 1.0
CG1 A:ILE32 5.0 0.0 1.0

Reference:

A.M.Van Roon, N.M.Loening, E.Obayashi, J.C.Yang, A.J.Newman, H.Hernandez, K.Nagai, D.Neuhaus. Solution Structure of the U2 Snrnp Protein RDS3P Reveals A Knotted Zinc-Finger Motif. Proc.Natl.Acad.Sci.Usa V. 105 9621 2008.
ISSN: ISSN 0027-8424
PubMed: 18621724
DOI: 10.1073/PNAS.0802494105
Page generated: Wed Dec 16 03:33:18 2020

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