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Zinc in PDB 2jyi: Solution Structure of Mll Cxxc Domain

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Mll Cxxc Domain (pdb code 2jyi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Mll Cxxc Domain, PDB code: 2jyi:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2jyi

Go back to Zinc Binding Sites List in 2jyi
Zinc binding site 1 out of 2 in the Solution Structure of Mll Cxxc Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Mll Cxxc Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:36.6
occ:1.00
SG A:CYS1155 2.3 53.4 1.0
SG A:CYS1161 2.3 42.0 1.0
SG A:CYS1158 2.3 41.5 1.0
SG A:CYS1194 2.3 0.4 1.0
HA A:CYS1194 2.8 42.4 1.0
H A:CYS1155 3.0 37.2 1.0
HB2 A:CYS1194 3.1 37.2 1.0
CB A:CYS1194 3.1 74.3 1.0
H A:GLY1156 3.1 37.2 1.0
HB2 A:CYS1161 3.1 37.2 1.0
HB3 A:CYS1158 3.2 37.2 1.0
H A:CYS1161 3.3 37.2 1.0
CB A:CYS1161 3.4 63.3 1.0
CB A:CYS1158 3.4 53.4 1.0
H A:GLN1195 3.4 37.2 1.0
CA A:CYS1194 3.4 10.4 1.0
H A:CYS1158 3.5 37.2 1.0
CB A:CYS1155 3.6 33.2 1.0
HB3 A:CYS1155 3.7 37.2 1.0
N A:CYS1155 3.8 23.1 1.0
H A:ASN1196 3.8 37.2 1.0
N A:GLY1156 4.0 23.4 1.0
N A:CYS1161 4.0 41.1 1.0
N A:GLN1195 4.1 50.3 1.0
HB3 A:CYS1194 4.1 37.2 1.0
CA A:CYS1155 4.1 1.1 1.0
HB3 A:CYS1161 4.1 37.2 1.0
H A:GLN1157 4.2 37.2 1.0
N A:CYS1158 4.2 21.3 1.0
HB2 A:CYS1158 4.2 37.2 1.0
C A:CYS1194 4.2 55.2 1.0
HB3 A:ARG1154 4.3 37.2 1.0
CA A:CYS1161 4.3 54.4 1.0
CA A:CYS1158 4.3 11.3 1.0
HB2 A:CYS1155 4.4 37.2 1.0
HA A:ARG1154 4.6 51.1 1.0
C A:CYS1155 4.6 10.2 1.0
N A:CYS1194 4.6 72.2 1.0
HD3 A:ARG1154 4.7 37.2 1.0
O A:CYS1158 4.7 10.2 1.0
HB2 A:ASN1196 4.7 37.2 1.0
N A:ASN1196 4.8 31.3 1.0
HA A:CYS1161 4.8 20.6 1.0
C A:CYS1158 4.8 1.2 1.0
C A:ARG1154 4.8 30.3 1.0
H A:GLY1160 4.8 37.2 1.0
HA3 A:GLY1160 4.9 37.2 1.0
N A:GLN1157 4.9 34.1 1.0

Zinc binding site 2 out of 2 in 2jyi

Go back to Zinc Binding Sites List in 2jyi
Zinc binding site 2 out of 2 in the Solution Structure of Mll Cxxc Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Mll Cxxc Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2002

b:36.6
occ:1.00
SG A:CYS1167 2.3 63.1 1.0
SG A:CYS1170 2.3 33.3 1.0
SG A:CYS1189 2.3 22.2 1.0
SG A:CYS1173 2.4 43.2 1.0
H A:GLY1168 2.7 37.2 1.0
H A:CYS1167 2.8 37.2 1.0
HB2 A:CYS1173 3.1 37.2 1.0
H A:CYS1170 3.1 37.2 1.0
HB3 A:ASP1166 3.2 37.2 1.0
HB3 A:CYS1170 3.2 37.2 1.0
N A:CYS1167 3.4 33.4 1.0
CB A:CYS1173 3.4 10.1 1.0
CB A:CYS1170 3.4 20.0 1.0
N A:GLY1168 3.5 61.4 1.0
HA A:CYS1189 3.6 15.2 1.0
H A:MET1191 3.6 37.2 1.0
CB A:CYS1189 3.6 1.2 1.0
CB A:CYS1167 3.6 20.2 1.0
HB2 A:CYS1189 3.7 37.2 1.0
HB3 A:MET1191 3.8 37.2 1.0
H A:LYS1190 3.8 37.2 1.0
H A:VAL1169 3.9 37.2 1.0
CA A:CYS1167 3.9 12.5 1.0
HB3 A:CYS1167 4.0 37.2 1.0
N A:CYS1170 4.0 31.5 1.0
HB2 A:MET1191 4.1 37.2 1.0
CA A:CYS1189 4.1 5.2 1.0
HA A:ASP1166 4.1 42.0 1.0
H A:CYS1173 4.1 37.2 1.0
HB3 A:CYS1173 4.1 37.2 1.0
CB A:ASP1166 4.2 42.3 1.0
C A:ASP1166 4.2 24.2 1.0
C A:CYS1167 4.2 3.0 1.0
HB2 A:CYS1170 4.2 37.2 1.0
CA A:CYS1170 4.3 20.3 1.0
N A:LYS1190 4.4 63.3 1.0
CA A:CYS1173 4.4 51.1 1.0
CA A:ASP1166 4.4 54.3 1.0
N A:CYS1173 4.4 72.1 1.0
CB A:MET1191 4.4 14.2 1.0
HB2 A:CYS1167 4.5 37.2 1.0
HA A:CYS1173 4.5 14.2 1.0
HB3 A:CYS1189 4.5 37.2 1.0
N A:VAL1169 4.5 5.1 1.0
HA2 A:GLY1168 4.5 37.2 1.0
N A:MET1191 4.5 51.4 1.0
CA A:GLY1168 4.5 61.1 1.0
C A:CYS1189 4.6 3.2 1.0
HB2 A:ASP1166 4.6 37.2 1.0
O A:CYS1170 4.8 41.5 1.0
C A:GLY1168 4.9 41.4 1.0
HA A:CYS1167 4.9 41.3 1.0
C A:CYS1170 4.9 31.2 1.0
HB3 A:LYS1190 4.9 37.2 1.0
HE2 A:PHE1179 5.0 72.4 1.0

Reference:

T.Cierpicki, L.E.Riesbeck, J.Grembecka, S.M.Lukasik, M.Omonkowska, D.Shultis, N.J.Zeleznik-Le, J.H.Bushweller. Structural Basis For Maintenance of Unmethylated Cpg Elements By the Cxxc Domain of Mll and Its Critical Contributions to Mll-AF9 Immortalization Activity To Be Published.
Page generated: Wed Dec 16 03:33:03 2020

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