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Zinc in PDB 2jwo: A Phd Finger Motif in the C-Terminus of RAG2 Modulates Recombination Activity

Zinc Binding Sites:

The binding sites of Zinc atom in the A Phd Finger Motif in the C-Terminus of RAG2 Modulates Recombination Activity (pdb code 2jwo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the A Phd Finger Motif in the C-Terminus of RAG2 Modulates Recombination Activity, PDB code: 2jwo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2jwo

Go back to Zinc Binding Sites List in 2jwo
Zinc binding site 1 out of 2 in the A Phd Finger Motif in the C-Terminus of RAG2 Modulates Recombination Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A Phd Finger Motif in the C-Terminus of RAG2 Modulates Recombination Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn488

b:0.0
occ:1.00
ND1 A:HIS455 2.1 0.0 1.0
SG A:CYS423 2.3 0.0 1.0
SG A:CYS419 2.3 0.0 1.0
SG A:CYS458 2.4 0.0 1.0
HB3 A:CYS419 2.5 0.0 1.0
HB2 A:HIS455 2.8 0.0 1.0
CB A:CYS419 2.9 0.0 1.0
HG22 A:VAL425 3.0 0.0 1.0
CE1 A:HIS455 3.1 0.0 1.0
CG A:HIS455 3.1 0.0 1.0
HB A:VAL425 3.1 0.0 1.0
H A:CYS419 3.1 0.0 1.0
HB2 A:CYS423 3.3 0.0 1.0
HE1 A:HIS455 3.3 0.0 1.0
CB A:CYS458 3.3 0.0 1.0
HB3 A:CYS458 3.4 0.0 1.0
CB A:CYS423 3.4 0.0 1.0
CB A:HIS455 3.4 0.0 1.0
HB2 A:CYS458 3.4 0.0 1.0
H A:HIS455 3.5 0.0 1.0
H A:VAL425 3.5 0.0 1.0
HA A:CYS423 3.6 0.0 1.0
HB2 A:CYS419 3.7 0.0 1.0
CG2 A:VAL425 3.7 0.0 1.0
H A:ASP424 3.7 0.0 1.0
HG23 A:VAL425 3.8 0.0 1.0
N A:CYS419 3.8 0.0 1.0
CB A:VAL425 3.9 0.0 1.0
CA A:CYS423 4.0 0.0 1.0
CA A:CYS419 4.0 0.0 1.0
HB3 A:HIS455 4.1 0.0 1.0
H A:CYS420 4.2 0.0 1.0
NE2 A:HIS455 4.2 0.0 1.0
CD2 A:HIS455 4.2 0.0 1.0
N A:HIS455 4.3 0.0 1.0
HB3 A:CYS423 4.3 0.0 1.0
N A:VAL425 4.4 0.0 1.0
N A:ASP424 4.5 0.0 1.0
CA A:HIS455 4.5 0.0 1.0
HA A:THR418 4.7 0.0 1.0
HG21 A:VAL425 4.7 0.0 1.0
HB2 A:CYS420 4.7 0.0 1.0
C A:CYS423 4.7 0.0 1.0
N A:CYS420 4.7 0.0 1.0
CA A:CYS458 4.7 0.0 1.0
C A:CYS419 4.8 0.0 1.0
HG11 A:VAL425 4.8 0.0 1.0
HA A:CYS419 4.9 0.0 1.0
CA A:VAL425 4.9 0.0 1.0
HA A:CYS458 4.9 0.0 1.0
CG1 A:VAL425 4.9 0.0 1.0
C A:THR418 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2jwo

Go back to Zinc Binding Sites List in 2jwo
Zinc binding site 2 out of 2 in the A Phd Finger Motif in the C-Terminus of RAG2 Modulates Recombination Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of A Phd Finger Motif in the C-Terminus of RAG2 Modulates Recombination Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn489

b:0.0
occ:1.00
ND1 A:HIS481 2.0 0.0 1.0
NE2 A:HIS452 2.0 0.0 1.0
SG A:CYS478 2.3 0.0 1.0
SG A:CYS446 2.4 0.0 1.0
HB3 A:CYS478 2.5 0.0 1.0
HB2 A:CYS446 2.7 0.0 1.0
HB2 A:HIS481 2.9 0.0 1.0
CB A:CYS446 2.9 0.0 1.0
CB A:CYS478 3.0 0.0 1.0
CE1 A:HIS481 3.0 0.0 1.0
CD2 A:HIS452 3.0 0.0 1.0
CE1 A:HIS452 3.1 0.0 1.0
CG A:HIS481 3.1 0.0 1.0
HB3 A:CYS446 3.2 0.0 1.0
HE1 A:HIS481 3.2 0.0 1.0
HD2 A:HIS452 3.2 0.0 1.0
HE1 A:HIS452 3.3 0.0 1.0
H A:CYS478 3.4 0.0 1.0
CB A:HIS481 3.5 0.0 1.0
HB2 A:CYS478 3.6 0.0 1.0
HB3 A:HIS448 3.9 0.0 1.0
HB3 A:HIS481 4.0 0.0 1.0
N A:CYS478 4.1 0.0 1.0
CA A:CYS478 4.1 0.0 1.0
NE2 A:HIS481 4.2 0.0 1.0
CD2 A:HIS481 4.2 0.0 1.0
CG A:HIS452 4.2 0.0 1.0
ND1 A:HIS452 4.2 0.0 1.0
CA A:CYS446 4.4 0.0 1.0
H A:HIS481 4.4 0.0 1.0
HB3 A:GLU480 4.4 0.0 1.0
N A:HIS481 4.5 0.0 1.0
H A:HIS448 4.5 0.0 1.0
H A:HIS452 4.6 0.0 1.0
HA A:CYS446 4.6 0.0 1.0
CA A:HIS481 4.7 0.0 1.0
H A:GLU480 4.8 0.0 1.0
CB A:HIS448 4.9 0.0 1.0
C A:CYS478 4.9 0.0 1.0
HB2 A:HIS448 4.9 0.0 1.0
HA A:CYS478 5.0 0.0 1.0

Reference:

S.K.Elkin, D.Ivanov, M.Ewalt, C.G.Ferguson, S.G.Hyberts, Z.Y.Sun, G.D.Prestwich, J.Yuan, G.Wagner, M.A.Oettinger, O.P.Gozani. A Phd Finger Motif in the C Terminus of RAG2 Modulates Recombination Activity. J.Biol.Chem. V. 280 28701 2005.
ISSN: ISSN 0021-9258
PubMed: 15964836
DOI: 10.1074/JBC.M504731200
Page generated: Wed Dec 16 03:33:06 2020

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