Zinc in PDB 2jw6: Solution Structure of the DEAF1 Mynd Domain

The binding sites of Zinc atom in the Solution Structure of the DEAF1 Mynd Domain (pdb code 2jw6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the DEAF1 Mynd Domain, PDB code: 2jw6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the DEAF1 Mynd Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the DEAF1 Mynd Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:0.3 occ:1.00 SG A:CYS528 2.3 0.4 1.0 SG A:CYS507 2.3 0.5 1.0 SG A:CYS524 2.3 0.3 1.0 SG A:CYS504 2.3 0.3 1.0 H A:CYS524 2.7 0.2 1.0 H A:SER525 2.9 0.2 1.0 HB3 A:ASN506 3.0 0.5 1.0 HB3 A:CYS528 3.1 0.8 1.0 HB2 A:CYS507 3.2 1.0 1.0 H A:CYS507 3.3 0.5 1.0 CB A:CYS528 3.3 0.6 1.0 CB A:CYS507 3.3 0.6 1.0 H A:GLY508 3.4 0.7 1.0 CB A:CYS524 3.4 0.3 1.0 CB A:CYS504 3.5 0.2 1.0 N A:CYS524 3.5 0.1 1.0 HB3 A:TYR523 3.5 0.3 1.0 HB2 A:CYS504 3.5 0.3 1.0 HB3 A:CYS524 3.5 0.3 1.0 N A:CYS507 3.6 0.5 1.0 HB3 A:CYS504 3.7 0.3 1.0 HB2 A:CYS528 3.7 0.8 1.0 N A:SER525 3.8 0.2 1.0 CA A:CYS524 3.9 0.2 1.0 HD2 A:TYR523 4.0 0.6 1.0 CA A:CYS507 4.0 0.6 1.0 CB A:ASN506 4.1 0.6 1.0 HE1 A:PHE527 4.1 0.5 1.0 HB3 A:CYS507 4.2 0.9 1.0 HZ A:PHE527 4.3 0.5 1.0 N A:GLY508 4.3 0.7 1.0 HB3 A:SER525 4.3 0.9 1.0 HB2 A:CYS524 4.3 0.4 1.0 C A:CYS524 4.4 0.2 1.0 CE1 A:PHE527 4.4 0.4 1.0 C A:ASN506 4.4 0.6 1.0 OD1 A:ASN506 4.4 1.4 1.0 H A:ASN506 4.4 0.5 1.0 CZ A:PHE527 4.4 0.4 1.0 H A:CYS528 4.5 0.3 1.0 CB A:TYR523 4.5 0.4 1.0 C A:TYR523 4.5 0.2 1.0 CA A:CYS528 4.6 0.4 1.0 HA A:TYR523 4.6 0.2 1.0 CG A:ASN506 4.6 0.7 1.0 CA A:ASN506 4.7 0.6 1.0 C A:CYS507 4.7 0.7 1.0 HB2 A:SER525 4.7 1.0 1.0 HB2 A:ASN506 4.7 0.7 1.0 CA A:SER525 4.8 0.2 1.0 CA A:CYS504 4.8 0.3 1.0 CB A:SER525 4.8 0.3 1.0 CA A:TYR523 4.8 0.2 1.0 HA A:CYS528 4.8 0.5 1.0 HA A:CYS524 4.9 0.2 1.0 HA A:CYS507 4.9 0.6 1.0 N A:ASN506 4.9 0.5 1.0 O A:SER525 4.9 0.2 1.0 CD2 A:TYR523 5.0 0.6 1.0 HA A:CYS504 5.0 0.4 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the DEAF1 Mynd Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the DEAF1 Mynd Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:0.3 occ:1.00 NE2 A:HIS536 2.0 0.4 1.0 SG A:CYS515 2.3 0.4 1.0 SG A:CYS540 2.3 0.3 1.0 SG A:CYS518 2.3 0.3 1.0 CE1 A:HIS536 2.9 0.5 1.0 CD2 A:HIS536 3.0 0.4 1.0 HB3 A:CYS515 3.2 0.3 1.0 HE1 A:HIS536 3.2 0.6 1.0 HB2 A:CYS540 3.2 0.3 1.0 HD2 A:HIS536 3.2 0.6 1.0 HB3 A:CYS518 3.2 0.4 1.0 CB A:CYS540 3.3 0.3 1.0 CB A:CYS515 3.4 0.3 1.0 CB A:CYS518 3.4 0.3 1.0 HA A:CYS540 3.5 0.5 1.0 HZ3 A:TRP533 3.7 0.4 1.0 HG23 A:VAL521 3.8 1.1 1.0 HE3 A:TRP533 3.8 0.4 1.0 HB2 A:CYS515 3.8 0.4 1.0 H A:HIS519 3.9 0.3 1.0 CA A:CYS540 4.0 0.4 1.0 H A:LYS520 4.0 0.3 1.0 H A:GLY517 4.0 0.4 1.0 N A:CYS518 4.0 0.3 1.0 ND1 A:HIS536 4.0 0.5 1.0 CG A:HIS536 4.1 0.4 1.0 H A:CYS518 4.1 0.3 1.0 HB2 A:LYS520 4.2 0.3 1.0 HB2 A:CYS518 4.2 0.4 1.0 HB3 A:CYS540 4.2 0.4 1.0 HA3 A:GLY517 4.2 0.4 1.0 C A:GLY517 4.3 0.4 1.0 CA A:CYS518 4.3 0.3 1.0 H A:GLY541 4.4 0.7 1.0 O A:CYS515 4.4 0.3 1.0 CZ3 A:TRP533 4.5 0.5 1.0 CE3 A:TRP533 4.5 0.4 1.0 CA A:GLY517 4.6 0.4 1.0 N A:HIS519 4.7 0.2 1.0 CA A:CYS515 4.7 0.3 1.0 CG2 A:VAL521 4.7 0.3 1.0 N A:GLY517 4.7 0.3 1.0 C A:CYS515 4.7 0.3 1.0 HG21 A:VAL521 4.7 1.0 1.0 O A:GLY517 4.8 0.4 1.0 N A:CYS540 4.9 0.4 1.0 HD1 A:HIS536 4.9 0.7 1.0 N A:LYS520 5.0 0.2 1.0 HG22 A:VAL521 5.0 0.9 1.0

R.Spadaccini, H.Perrin, M.J.Bottomley, S.Ansieau, M.Sattler. Retraction Notice to "Structure and Functional Analysis of the Mynd Domain" [J. Mol. Biol. (2006) 358, 498-508]. J.Mol.Biol. V. 376 1523 2008.
ISSN: ISSN 0022-2836
PubMed: 18286714