Zinc in PDB 2jrp: Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target STR86
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target STR86
(pdb code 2jrp). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target STR86, PDB code: 2jrp:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2jrp
Go back to
Zinc Binding Sites List in 2jrp
Zinc binding site 1 out
of 2 in the Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target STR86
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target STR86 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn150
b:0.0
occ:1.00
|
OG1
|
A:THR23
|
1.8
|
0.0
|
1.0
|
SG
|
A:CYS8
|
1.9
|
0.0
|
1.0
|
OE2
|
A:GLU22
|
2.0
|
0.0
|
1.0
|
O
|
A:THR23
|
2.0
|
0.0
|
1.0
|
OE1
|
A:GLU22
|
2.0
|
0.0
|
1.0
|
CD
|
A:GLU22
|
2.2
|
0.0
|
1.0
|
HG1
|
A:THR23
|
2.5
|
0.0
|
1.0
|
H
|
A:THR23
|
2.7
|
0.0
|
1.0
|
C
|
A:THR23
|
2.7
|
0.0
|
1.0
|
CB
|
A:THR23
|
2.9
|
0.0
|
1.0
|
N
|
A:THR23
|
2.9
|
0.0
|
1.0
|
CA
|
A:THR23
|
3.0
|
0.0
|
1.0
|
CB
|
A:CYS8
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS8
|
3.4
|
0.0
|
1.0
|
SG
|
A:CYS21
|
3.5
|
0.0
|
1.0
|
HB
|
A:THR23
|
3.6
|
0.0
|
1.0
|
HG23
|
A:THR23
|
3.7
|
0.0
|
1.0
|
CG
|
A:GLU22
|
3.7
|
0.0
|
1.0
|
HB3
|
A:CYS8
|
3.7
|
0.0
|
1.0
|
C
|
A:GLU22
|
3.7
|
0.0
|
1.0
|
HD2
|
A:HIS10
|
3.8
|
0.0
|
1.0
|
HB2
|
A:CYS24
|
3.8
|
0.0
|
1.0
|
CG2
|
A:THR23
|
3.8
|
0.0
|
1.0
|
SG
|
A:CYS24
|
3.9
|
0.0
|
1.0
|
N
|
A:CYS24
|
4.0
|
0.0
|
1.0
|
HA
|
A:THR23
|
4.0
|
0.0
|
1.0
|
HB3
|
A:CYS5
|
4.1
|
0.0
|
1.0
|
N
|
A:GLU22
|
4.2
|
0.0
|
1.0
|
H
|
A:GLU22
|
4.2
|
0.0
|
1.0
|
HG22
|
A:THR23
|
4.2
|
0.0
|
1.0
|
HG3
|
A:GLU22
|
4.2
|
0.0
|
1.0
|
HB2
|
A:GLU22
|
4.3
|
0.0
|
1.0
|
O
|
A:CYS8
|
4.3
|
0.0
|
1.0
|
CA
|
A:GLU22
|
4.3
|
0.0
|
1.0
|
HG2
|
A:GLU22
|
4.3
|
0.0
|
1.0
|
CB
|
A:CYS24
|
4.3
|
0.0
|
1.0
|
CB
|
A:GLU22
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS5
|
4.3
|
0.0
|
1.0
|
CD2
|
A:HIS10
|
4.5
|
0.0
|
1.0
|
O
|
A:GLU22
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS8
|
4.6
|
0.0
|
1.0
|
H
|
A:CYS24
|
4.6
|
0.0
|
1.0
|
HB2
|
A:HIS10
|
4.6
|
0.0
|
1.0
|
H
|
A:CYS8
|
4.6
|
0.0
|
1.0
|
C
|
A:CYS21
|
4.6
|
0.0
|
1.0
|
CB
|
A:CYS5
|
4.6
|
0.0
|
1.0
|
HD13
|
A:LEU12
|
4.7
|
0.0
|
1.0
|
HG21
|
A:THR23
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS24
|
4.7
|
0.0
|
1.0
|
H
|
A:ALA25
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS8
|
4.9
|
0.0
|
1.0
|
SG
|
A:CYS5
|
4.9
|
0.0
|
1.0
|
CB
|
A:CYS21
|
4.9
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2jrp
Go back to
Zinc Binding Sites List in 2jrp
Zinc binding site 2 out
of 2 in the Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target STR86
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target STR86 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn200
b:0.0
occ:1.00
|
ND1
|
A:HIS58
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS54
|
2.0
|
0.0
|
1.0
|
O
|
A:GLY59
|
2.0
|
0.0
|
1.0
|
CE1
|
A:HIS58
|
2.8
|
0.0
|
1.0
|
HE1
|
A:HIS58
|
2.9
|
0.0
|
1.0
|
HD13
|
A:ILE61
|
2.9
|
0.0
|
1.0
|
HB3
|
A:HIS58
|
3.1
|
0.0
|
1.0
|
SG
|
A:CYS34
|
3.1
|
0.0
|
1.0
|
C
|
A:GLY59
|
3.1
|
0.0
|
1.0
|
CG
|
A:HIS58
|
3.1
|
0.0
|
1.0
|
H
|
A:GLY59
|
3.4
|
0.0
|
1.0
|
HG13
|
A:ILE61
|
3.4
|
0.0
|
1.0
|
N
|
A:GLY59
|
3.6
|
0.0
|
1.0
|
CB
|
A:HIS58
|
3.7
|
0.0
|
1.0
|
CB
|
A:CYS54
|
3.7
|
0.0
|
1.0
|
CA
|
A:GLY59
|
3.8
|
0.0
|
1.0
|
CD1
|
A:ILE61
|
3.8
|
0.0
|
1.0
|
O
|
A:CYS54
|
3.8
|
0.0
|
1.0
|
HA3
|
A:GLY59
|
3.9
|
0.0
|
1.0
|
HD22
|
A:LEU41
|
3.9
|
0.0
|
1.0
|
HB2
|
A:CYS54
|
4.0
|
0.0
|
1.0
|
NE2
|
A:HIS58
|
4.0
|
0.0
|
1.0
|
HD12
|
A:ILE61
|
4.0
|
0.0
|
1.0
|
CG1
|
A:ILE61
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS58
|
4.2
|
0.0
|
1.0
|
SG
|
A:CYS37
|
4.2
|
0.0
|
1.0
|
HD13
|
A:LEU41
|
4.2
|
0.0
|
1.0
|
HG12
|
A:ILE61
|
4.2
|
0.0
|
1.0
|
C
|
A:HIS58
|
4.2
|
0.0
|
1.0
|
N
|
A:LEU60
|
4.2
|
0.0
|
1.0
|
HA
|
A:LEU60
|
4.3
|
0.0
|
1.0
|
HB3
|
A:CYS54
|
4.3
|
0.0
|
1.0
|
H
|
A:CYS54
|
4.3
|
0.0
|
1.0
|
HB2
|
A:HIS58
|
4.5
|
0.0
|
1.0
|
CB
|
A:CYS34
|
4.6
|
0.0
|
1.0
|
CA
|
A:HIS58
|
4.6
|
0.0
|
1.0
|
CA
|
A:LEU60
|
4.6
|
0.0
|
1.0
|
C
|
A:LEU60
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS54
|
4.6
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
4.6
|
0.0
|
1.0
|
C
|
A:CYS54
|
4.7
|
0.0
|
1.0
|
HD11
|
A:ILE61
|
4.7
|
0.0
|
1.0
|
O
|
A:LEU60
|
4.7
|
0.0
|
1.0
|
HA2
|
A:GLY59
|
4.8
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
4.8
|
0.0
|
1.0
|
HE2
|
A:HIS58
|
4.8
|
0.0
|
1.0
|
N
|
A:CYS54
|
4.9
|
0.0
|
1.0
|
CD2
|
A:LEU41
|
4.9
|
0.0
|
1.0
|
O
|
A:HIS58
|
5.0
|
0.0
|
1.0
|
|
Reference:
K.Ding,
T.A.Ramelot,
J.R.Cort,
H.Wang,
C.Nwosu,
K.Cunningham,
L.Owens,
L.Ma,
R.Xiao,
J.Liu,
M.C.Baran,
G.V.T.Swapna,
T.B.Acton,
B.Rost,
G.T.Montelione,
M.A.Kennedy.
Solution uc(Nmr) Structure of Yfgj From Salmonella Typhimurium Modeled with Two Zn+2 Bound. To Be Published.
Page generated: Thu Oct 17 01:21:23 2024
|