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Zinc in PDB 2jrj: Solution Structure of the Human PIRH2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target HT2B

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Human PIRH2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target HT2B (pdb code 2jrj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Human PIRH2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target HT2B, PDB code: 2jrj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2jrj

Go back to Zinc Binding Sites List in 2jrj
Zinc binding site 1 out of 2 in the Solution Structure of the Human PIRH2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target HT2B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Human PIRH2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target HT2B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn62

b:0.0
occ:1.00
NE2 A:HIS41 2.1 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
SG A:CYS17 2.3 0.0 1.0
SG A:CYS20 2.3 0.0 1.0
HB A:ILE19 2.8 0.0 1.0
CE1 A:HIS41 3.0 0.0 1.0
CD2 A:HIS41 3.1 0.0 1.0
HE1 A:HIS41 3.3 0.0 1.0
HD2 A:HIS41 3.3 0.0 1.0
HB2 A:CYS44 3.4 0.0 1.0
HB2 A:GLU22 3.5 0.0 1.0
CB A:CYS44 3.5 0.0 1.0
HB3 A:CYS20 3.5 0.0 1.0
HB3 A:CYS17 3.5 0.0 1.0
CB A:CYS20 3.6 0.0 1.0
CB A:CYS17 3.6 0.0 1.0
H A:CYS20 3.7 0.0 1.0
HB3 A:CYS44 3.8 0.0 1.0
N A:CYS20 3.8 0.0 1.0
HB2 A:CYS17 3.9 0.0 1.0
CB A:ILE19 3.9 0.0 1.0
OE2 A:GLU22 4.0 0.0 1.0
ND1 A:HIS41 4.1 0.0 1.0
CG A:HIS41 4.2 0.0 1.0
C A:ILE19 4.2 0.0 1.0
CA A:CYS20 4.3 0.0 1.0
H A:GLU22 4.3 0.0 1.0
HG3 A:GLU22 4.4 0.0 1.0
HB2 A:CYS20 4.4 0.0 1.0
HG22 A:ILE19 4.5 0.0 1.0
CB A:GLU22 4.5 0.0 1.0
CA A:ILE19 4.5 0.0 1.0
H A:ILE19 4.6 0.0 1.0
CG2 A:ILE19 4.6 0.0 1.0
HG23 A:ILE19 4.6 0.0 1.0
HG12 A:ILE19 4.7 0.0 1.0
HG13 A:ILE19 4.7 0.0 1.0
CD A:GLU22 4.7 0.0 1.0
H A:HIS41 4.7 0.0 1.0
CG1 A:ILE19 4.7 0.0 1.0
CG A:GLU22 4.7 0.0 1.0
N A:ILE19 4.8 0.0 1.0
CA A:CYS44 4.8 0.0 1.0
O A:CYS17 4.8 0.0 1.0
C A:CYS20 4.8 0.0 1.0
OE2 A:GLU47 4.9 0.0 1.0
CA A:CYS17 4.9 0.0 1.0
O A:ILE19 4.9 0.0 1.0
HA A:CYS44 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2jrj

Go back to Zinc Binding Sites List in 2jrj
Zinc binding site 2 out of 2 in the Solution Structure of the Human PIRH2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target HT2B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Human PIRH2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target HT2B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn63

b:0.0
occ:1.00
NE2 A:HIS38 2.1 0.0 1.0
SG A:CYS58 2.3 0.0 1.0
SG A:CYS55 2.3 0.0 1.0
SG A:CYS36 2.3 0.0 1.0
CE1 A:HIS38 3.0 0.0 1.0
CD2 A:HIS38 3.1 0.0 1.0
HE1 A:HIS38 3.3 0.0 1.0
HB2 A:CYS55 3.3 0.0 1.0
HD2 A:HIS38 3.3 0.0 1.0
HB3 A:CYS36 3.3 0.0 1.0
HB2 A:CYS58 3.4 0.0 1.0
CB A:CYS58 3.5 0.0 1.0
CB A:CYS55 3.5 0.0 1.0
CB A:CYS36 3.5 0.0 1.0
HA A:CYS58 4.0 0.0 1.0
HB3 A:CYS55 4.0 0.0 1.0
HB2 A:CYS36 4.1 0.0 1.0
O A:CYS36 4.2 0.0 1.0
ND1 A:HIS38 4.2 0.0 1.0
H A:CYS58 4.2 0.0 1.0
CA A:CYS58 4.2 0.0 1.0
CG A:HIS38 4.2 0.0 1.0
O A:CYS55 4.3 0.0 1.0
HB3 A:CYS58 4.4 0.0 1.0
N A:CYS58 4.4 0.0 1.0
CA A:CYS55 4.7 0.0 1.0
CA A:CYS36 4.7 0.0 1.0
C A:CYS36 4.8 0.0 1.0
H A:CYS55 4.8 0.0 1.0
C A:CYS55 4.9 0.0 1.0

Reference:

Y.Sheng, R.C.Laister, A.Lemak, B.Wu, E.Tai, S.Duan, J.Lukin, M.Sunnerhagen, S.Srisailam, M.Karra, S.Benchimol, C.H.Arrowsmith. Molecular Basis of PIRH2-Mediated P53 Ubiquitylation. Nat.Struct.Mol.Biol. V. 15 1334 2008.
ISSN: ISSN 1545-9993
PubMed: 19043414
DOI: 10.1038/NSMB.1521
Page generated: Wed Dec 16 03:32:39 2020

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