Zinc in PDB 2jne: uc(Nmr) Structure of E.Coli Yfgj Modelled with Two Zn+2 Bound. Northeast Structural Genomics Consortium Target ER317.
Zinc Binding Sites:
The binding sites of Zinc atom in the uc(Nmr) Structure of E.Coli Yfgj Modelled with Two Zn+2 Bound. Northeast Structural Genomics Consortium Target ER317.
(pdb code 2jne). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
uc(Nmr) Structure of E.Coli Yfgj Modelled with Two Zn+2 Bound. Northeast Structural Genomics Consortium Target ER317., PDB code: 2jne:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2jne
Go back to
Zinc Binding Sites List in 2jne
Zinc binding site 1 out
of 2 in the uc(Nmr) Structure of E.Coli Yfgj Modelled with Two Zn+2 Bound. Northeast Structural Genomics Consortium Target ER317.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of uc(Nmr) Structure of E.Coli Yfgj Modelled with Two Zn+2 Bound. Northeast Structural Genomics Consortium Target ER317. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn150
b:0.0
occ:1.00
|
SG
|
A:CYS8
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS5
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS24
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS21
|
2.4
|
0.0
|
1.0
|
O
|
A:CYS8
|
2.6
|
0.0
|
1.0
|
HB3
|
A:CYS21
|
2.9
|
0.0
|
1.0
|
CB
|
A:CYS24
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS21
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS5
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS24
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS24
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS5
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS8
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS8
|
3.5
|
0.0
|
1.0
|
HB2
|
A:CYS5
|
3.5
|
0.0
|
1.0
|
HB2
|
A:HIS10
|
3.6
|
0.0
|
1.0
|
C
|
A:CYS8
|
3.6
|
0.0
|
1.0
|
H
|
A:HIS10
|
3.9
|
0.0
|
1.0
|
HD23
|
A:LEU12
|
3.9
|
0.0
|
1.0
|
HB2
|
A:CYS21
|
4.0
|
0.0
|
1.0
|
HB3
|
A:GLU26
|
4.0
|
0.0
|
1.0
|
CA
|
A:CYS8
|
4.1
|
0.0
|
1.0
|
HD22
|
A:LEU12
|
4.1
|
0.0
|
1.0
|
HA
|
A:CYS21
|
4.2
|
0.0
|
1.0
|
HB3
|
A:CYS8
|
4.3
|
0.0
|
1.0
|
H
|
A:CYS8
|
4.4
|
0.0
|
1.0
|
N
|
A:HIS10
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS21
|
4.4
|
0.0
|
1.0
|
CB
|
A:HIS10
|
4.5
|
0.0
|
1.0
|
CD2
|
A:LEU12
|
4.5
|
0.0
|
1.0
|
H
|
A:CYS5
|
4.5
|
0.0
|
1.0
|
HB3
|
A:HIS10
|
4.7
|
0.0
|
1.0
|
N
|
A:CYS8
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS24
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS5
|
4.7
|
0.0
|
1.0
|
N
|
A:GLN9
|
4.7
|
0.0
|
1.0
|
O
|
A:HIS10
|
4.8
|
0.0
|
1.0
|
CA
|
A:HIS10
|
4.8
|
0.0
|
1.0
|
HB2
|
A:GLU26
|
4.9
|
0.0
|
1.0
|
C
|
A:HIS10
|
4.9
|
0.0
|
1.0
|
O
|
A:VAL11
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLU26
|
4.9
|
0.0
|
1.0
|
HD13
|
A:ILE28
|
5.0
|
0.0
|
1.0
|
HA
|
A:GLN9
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2jne
Go back to
Zinc Binding Sites List in 2jne
Zinc binding site 2 out
of 2 in the uc(Nmr) Structure of E.Coli Yfgj Modelled with Two Zn+2 Bound. Northeast Structural Genomics Consortium Target ER317.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of uc(Nmr) Structure of E.Coli Yfgj Modelled with Two Zn+2 Bound. Northeast Structural Genomics Consortium Target ER317. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn200
b:0.0
occ:1.00
|
OD1
|
A:ASP36
|
1.9
|
0.0
|
1.0
|
ND1
|
A:HIS58
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS37
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS34
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS54
|
2.4
|
0.0
|
1.0
|
CE1
|
A:HIS58
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASP36
|
3.0
|
0.0
|
1.0
|
HE1
|
A:HIS58
|
3.0
|
0.0
|
1.0
|
HB2
|
A:HIS58
|
3.1
|
0.0
|
1.0
|
CG
|
A:HIS58
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS34
|
3.4
|
0.0
|
1.0
|
OD2
|
A:ASP36
|
3.4
|
0.0
|
1.0
|
CB
|
A:HIS58
|
3.6
|
0.0
|
1.0
|
CB
|
A:CYS37
|
3.7
|
0.0
|
1.0
|
HB2
|
A:CYS37
|
3.7
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
3.8
|
0.0
|
1.0
|
HB2
|
A:CYS54
|
3.8
|
0.0
|
1.0
|
CB
|
A:CYS54
|
3.8
|
0.0
|
1.0
|
HB3
|
A:HIS58
|
3.9
|
0.0
|
1.0
|
NE2
|
A:HIS58
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS58
|
4.1
|
0.0
|
1.0
|
N
|
A:CYS37
|
4.1
|
0.0
|
1.0
|
H
|
A:ASP36
|
4.2
|
0.0
|
1.0
|
H
|
A:CYS37
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASP36
|
4.3
|
0.0
|
1.0
|
C
|
A:ASP36
|
4.3
|
0.0
|
1.0
|
HB2
|
A:HIS56
|
4.3
|
0.0
|
1.0
|
HB3
|
A:HIS56
|
4.4
|
0.0
|
1.0
|
HB3
|
A:CYS54
|
4.4
|
0.0
|
1.0
|
HB3
|
A:CYS37
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS37
|
4.5
|
0.0
|
1.0
|
HB2
|
A:ASP36
|
4.6
|
0.0
|
1.0
|
CA
|
A:ASP36
|
4.7
|
0.0
|
1.0
|
O
|
A:ASP36
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS34
|
4.7
|
0.0
|
1.0
|
N
|
A:ASP36
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS37
|
4.8
|
0.0
|
1.0
|
HE2
|
A:HIS58
|
4.8
|
0.0
|
1.0
|
CB
|
A:HIS56
|
4.9
|
0.0
|
1.0
|
CA
|
A:HIS58
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS34
|
5.0
|
0.0
|
1.0
|
HA
|
A:CYS54
|
5.0
|
0.0
|
1.0
|
CA
|
A:CYS54
|
5.0
|
0.0
|
1.0
|
|
Reference:
T.A.Ramelot,
J.R.Cort,
A.A.Yee,
C.H.Arrowsmith,
M.A.Kennedy.
uc(Nmr) Structure of E.Coli Yfgj Bound to Two Zn+2. To Be Published.
Page generated: Thu Oct 17 01:18:16 2024
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