Zinc in PDB 2jmo: Ibr Domain of Human Parkin

The binding sites of Zinc atom in the Ibr Domain of Human Parkin (pdb code 2jmo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Ibr Domain of Human Parkin, PDB code: 2jmo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Ibr Domain of Human Parkin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ibr Domain of Human Parkin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:35.5 occ:1.00 SG A:CYS33 2.3 42.1 1.0 SG A:CYS56 2.3 53.1 1.0 SG A:CYS28 2.3 33.1 1.0 SG A:CYS48 2.3 63.3 1.0 HB2 A:CYS28 3.1 100.0 1.0 CB A:CYS28 3.1 53.2 1.0 HB3 A:CYS28 3.2 100.0 1.0 O A:LEU54 3.3 11.3 1.0 HB1 A:ALA35 3.4 100.0 1.0 HB3 A:CYS33 3.4 100.0 1.0 CB A:CYS48 3.5 3.2 1.0 CB A:CYS33 3.5 14.1 1.0 H A:CYS56 3.5 100.0 1.0 HB2 A:CYS48 3.6 100.0 1.0 HB3 A:CYS48 3.7 100.0 1.0 CB A:CYS56 3.7 60.4 1.0 HB2 A:CYS56 3.7 100.0 1.0 HB2 A:ARG30 3.8 100.0 1.0 HB2 A:CYS33 3.9 100.0 1.0 N A:CYS56 3.9 13.0 1.0 HB3 A:LEU54 3.9 100.0 1.0 HG3 A:ARG30 4.0 100.0 1.0 C A:LEU54 4.2 52.1 1.0 H A:ALA35 4.3 100.0 1.0 CA A:CYS56 4.3 32.4 1.0 HA2 A:GLY55 4.4 100.0 1.0 CB A:ALA35 4.4 63.4 1.0 HB2 A:ALA35 4.4 100.0 1.0 HB3 A:CYS56 4.5 100.0 1.0 CA A:CYS28 4.5 71.5 1.0 C A:GLY55 4.6 13.4 1.0 HA A:CYS56 4.6 100.0 1.0 CG A:ARG30 4.6 24.1 1.0 HG2 A:ARG30 4.6 100.0 1.0 CB A:ARG30 4.7 4.3 1.0 O A:CYS33 4.7 73.1 1.0 HA A:CYS28 4.7 100.0 1.0 CA A:CYS33 4.8 62.0 1.0 CA A:CYS48 4.8 52.3 1.0 CA A:GLY55 4.8 1.5 1.0 HB3 A:ALA35 4.8 100.0 1.0 H A:ARG30 4.9 100.0 1.0 C A:CYS33 4.9 21.4 1.0 N A:GLY55 4.9 31.5 1.0 O A:CYS48 4.9 33.4 1.0 CB A:LEU54 4.9 60.2 1.0 HD13 A:LEU54 5.0 100.0 1.0

Zinc binding site 2 out of 2 in the Ibr Domain of Human Parkin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Ibr Domain of Human Parkin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:42.4 occ:1.00 NE2 A:HIS69 2.1 42.3 1.0 SG A:CYS73 2.3 11.4 1.0 SG A:CYS64 2.3 31.4 1.0 SG A:CYS61 2.3 13.4 1.0 HE1 A:HIS69 2.6 100.0 1.0 CE1 A:HIS69 2.7 12.0 1.0 HB3 A:CYS61 2.9 100.0 1.0 CB A:CYS61 3.1 40.3 1.0 H A:CYS64 3.1 100.0 1.0 CD2 A:HIS69 3.3 70.2 1.0 HB3 A:GLU63 3.4 100.0 1.0 HB2 A:CYS61 3.4 100.0 1.0 HB3 A:CYS64 3.6 100.0 1.0 CB A:CYS73 3.6 14.1 1.0 CB A:CYS64 3.6 75.1 1.0 HA A:CYS73 3.6 100.0 1.0 HB2 A:GLU63 3.7 100.0 1.0 HB3 A:CYS73 3.7 100.0 1.0 N A:CYS64 3.8 3.4 1.0 HD2 A:HIS69 3.8 100.0 1.0 ND1 A:HIS69 3.9 32.0 1.0 CB A:GLU63 4.0 1.2 1.0 CA A:CYS73 4.0 52.2 1.0 H A:CYS73 4.2 100.0 1.0 N A:CYS73 4.2 54.3 1.0 CG A:HIS69 4.2 12.3 1.0 CA A:CYS64 4.3 21.5 1.0 HB2 A:CYS64 4.4 100.0 1.0 CA A:CYS61 4.5 53.2 1.0 HB2 A:CYS73 4.5 100.0 1.0 H A:GLU63 4.6 100.0 1.0 HD1 A:HIS69 4.6 100.0 1.0 C A:GLU63 4.6 1.1 1.0 H A:HIS69 4.6 100.0 1.0 O A:CYS61 4.8 23.2 1.0 CA A:GLU63 4.8 41.3 1.0 C A:CYS61 4.8 25.2 1.0 C A:GLU72 4.9 21.3 1.0 H A:GLU66 4.9 100.0 1.0 N A:GLU63 4.9 31.3 1.0 HA A:CYS61 4.9 100.0 1.0

S.A.Beasley, V.A.Hristova, G.S.Shaw. Structure of the Parkin in-Between-Ring Domain Provides Insights For E3-Ligase Dysfunction in Autosomal Recessive Parkinson'S Disease. Proc.Natl.Acad.Sci.Usa V. 104 3095 2007.
ISSN: ISSN 0027-8424
PubMed: 17360614
DOI: 10.1073/PNAS.0610548104