Zinc in PDB 2jmd: Solution Structure of the Ring Domain of Human TRAF6

The binding sites of Zinc atom in the Solution Structure of the Ring Domain of Human TRAF6 (pdb code 2jmd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Ring Domain of Human TRAF6, PDB code: 2jmd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Ring Domain of Human TRAF6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring Domain of Human TRAF6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn65 b:0.0 occ:1.00 SG A:CYS12 2.2 0.0 1.0 SG A:CYS32 2.3 0.0 1.0 SG A:CYS29 2.3 0.0 1.0 SG A:CYS9 2.5 0.0 1.0 HB3 A:CYS9 2.6 0.0 1.0 HB2 A:CYS29 2.6 0.0 1.0 CB A:CYS9 2.9 0.0 1.0 HB2 A:CYS32 3.0 0.0 1.0 CB A:CYS29 3.0 0.0 1.0 CB A:CYS32 3.1 0.0 1.0 HB2 A:CYS9 3.2 0.0 1.0 HB3 A:CYS32 3.4 0.0 1.0 H A:CYS29 3.4 0.0 1.0 HB3 A:CYS12 3.5 0.0 1.0 CB A:CYS12 3.5 0.0 1.0 H A:CYS12 3.6 0.0 1.0 HB3 A:CYS29 3.7 0.0 1.0 HB A:ILE11 3.8 0.0 1.0 HB2 A:MET14 3.9 0.0 1.0 HE1 A:MET14 3.9 0.0 1.0 N A:CYS29 4.1 0.0 1.0 CA A:CYS29 4.2 0.0 1.0 HB2 A:CYS12 4.2 0.0 1.0 N A:CYS12 4.2 0.0 1.0 H A:MET14 4.3 0.0 1.0 H A:CYS32 4.3 0.0 1.0 HE2 A:MET14 4.3 0.0 1.0 CA A:CYS9 4.4 0.0 1.0 CA A:CYS12 4.5 0.0 1.0 CA A:CYS32 4.5 0.0 1.0 H A:ARG17 4.6 0.0 1.0 O A:CYS9 4.6 0.0 1.0 CE A:MET14 4.6 0.0 1.0 HA A:LEU16 4.7 0.0 1.0 HG23 A:ILE11 4.8 0.0 1.0 O A:MET14 4.8 0.0 1.0 C A:CYS9 4.8 0.0 1.0 CB A:ILE11 4.8 0.0 1.0 N A:CYS32 4.9 0.0 1.0 HA A:CYS29 4.9 0.0 1.0 H A:CYS9 4.9 0.0 1.0 HD22 A:LEU16 4.9 0.0 1.0 CB A:MET14 4.9 0.0 1.0 H A:ILE11 5.0 0.0 1.0 HD12 A:ILE11 5.0 0.0 1.0 HA A:CYS9 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Ring Domain of Human TRAF6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring Domain of Human TRAF6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn66 b:0.0 occ:1.00 OD1 A:ASP47 1.9 0.0 1.0 OD2 A:ASP47 2.0 0.0 1.0 SG A:CYS24 2.2 0.0 1.0 SG A:CYS44 2.3 0.0 1.0 CG A:ASP47 2.3 0.0 1.0 ND1 A:HIS26 2.7 0.0 1.0 HE1 A:HIS26 2.9 0.0 1.0 CE1 A:HIS26 3.1 0.0 1.0 HB2 A:GLU49 3.1 0.0 1.0 CB A:CYS24 3.4 0.0 1.0 HG2 A:GLU49 3.5 0.0 1.0 HB3 A:CYS24 3.5 0.0 1.0 H A:GLU49 3.6 0.0 1.0 HG3 A:GLU49 3.6 0.0 1.0 HB2 A:CYS44 3.6 0.0 1.0 CB A:CYS44 3.6 0.0 1.0 HB2 A:CYS24 3.7 0.0 1.0 H A:ASP47 3.8 0.0 1.0 CB A:ASP47 3.8 0.0 1.0 CG A:GLU49 3.9 0.0 1.0 CB A:GLU49 4.0 0.0 1.0 CG A:HIS26 4.0 0.0 1.0 HB3 A:CYS44 4.0 0.0 1.0 HB2 A:HIS26 4.1 0.0 1.0 HB A:VAL46 4.1 0.0 1.0 HB2 A:ASP47 4.3 0.0 1.0 HB3 A:ASP47 4.3 0.0 1.0 N A:ASP47 4.4 0.0 1.0 NE2 A:HIS26 4.4 0.0 1.0 N A:GLU49 4.4 0.0 1.0 CA A:ASP47 4.5 0.0 1.0 CB A:HIS26 4.6 0.0 1.0 C A:ASP47 4.7 0.0 1.0 H A:ASN48 4.7 0.0 1.0 HB3 A:GLU49 4.7 0.0 1.0 HZ A:PHE28 4.8 0.0 1.0 CA A:CYS24 4.8 0.0 1.0 CD2 A:HIS26 4.8 0.0 1.0 CA A:GLU49 4.8 0.0 1.0 N A:ASN48 4.9 0.0 1.0 HE2 A:PHE28 4.9 0.0 1.0 O A:CYS44 4.9 0.0 1.0 CA A:CYS44 4.9 0.0 1.0 H A:CYS44 5.0 0.0 1.0

P.Mercier, M.J.Lewis, D.D.Hau, L.F.Saltibus, W.Xiao, L.Spyracopoulos. Structure, Interactions, and Dynamics of the Ring Domain From Human TRAF6 Protein Sci. V. 16 602 2007.
ISSN: ISSN 0961-8368
PubMed: 17327397
DOI: 10.1110/PS.062358007