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Zinc in PDB 2jks: Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.

Protein crystallography data

The structure of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii., PDB code: 2jks was solved by M.J.Boulanger, M.E.Grigg, E.Bruic, O.Grujic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.89 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 92.050, 92.050, 98.310, 90.00, 90.00, 90.00
R / Rfree (%) 23.8 / 28.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. (pdb code 2jks). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii., PDB code: 2jks:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 2jks

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Zinc binding site 1 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1316

b:25.5
occ:1.00
OE1 A:GLU190 2.0 21.7 1.0
NE2 A:HIS311 2.0 21.2 1.0
ND1 A:HIS313 2.1 25.1 1.0
CD A:GLU190 2.9 33.6 1.0
CE1 A:HIS311 2.9 23.5 1.0
CE1 A:HIS313 3.0 27.7 1.0
CD2 A:HIS311 3.1 22.4 1.0
CG A:HIS313 3.1 27.4 1.0
OE2 A:GLU190 3.2 33.3 1.0
NZ A:LYS308 3.5 28.7 1.0
CB A:HIS313 3.5 26.8 1.0
CA A:HIS313 3.8 29.0 1.0
ND1 A:HIS311 4.1 28.4 1.0
NE2 A:HIS313 4.1 29.4 1.0
CG A:HIS311 4.2 26.6 1.0
CD2 A:HIS313 4.2 30.8 1.0
CG A:GLU190 4.2 28.9 1.0
CD A:LYS308 4.5 33.5 1.0
CE A:LYS308 4.6 34.4 1.0
N A:HIS313 4.7 28.4 1.0
C A:HIS313 4.8 31.9 1.0
CB A:GLU190 4.9 26.2 1.0
O A:HIS313 4.9 30.8 1.0

Zinc binding site 2 out of 8 in 2jks

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Zinc binding site 2 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1317

b:35.3
occ:1.00
O A:HOH2276 1.8 36.5 1.0
NE2 A:HIS310 2.1 31.9 1.0
OE1 A:GLU266 2.1 34.2 1.0
O A:HOH2275 2.3 32.9 1.0
CD A:GLU266 3.0 36.1 1.0
CE1 A:HIS310 3.0 28.9 1.0
CD2 A:HIS310 3.1 28.8 1.0
OE2 A:GLU266 3.2 41.4 1.0
O A:HOH2250 4.0 50.5 1.0
ND1 A:HIS310 4.1 30.8 1.0
CG A:HIS310 4.2 28.4 1.0
CG A:GLU266 4.4 32.9 1.0
O A:HOH2269 4.7 40.7 1.0
CB A:GLU266 4.7 30.8 1.0
CA A:GLU266 4.8 30.2 1.0

Zinc binding site 3 out of 8 in 2jks

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Zinc binding site 3 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1318

b:40.8
occ:1.00
ND1 A:HIS123 2.0 32.8 1.0
OE2 A:GLU125 2.1 33.9 1.0
CD A:GLU125 3.0 34.4 1.0
CG A:HIS123 3.0 29.8 1.0
CE1 A:HIS123 3.0 32.5 1.0
ZN A:ZN1322 3.0 50.0 1.0
OE1 A:GLU125 3.1 32.3 1.0
CB A:HIS123 3.3 28.6 1.0
NH1 A:ARG99 3.8 45.4 1.0
O A:HOH2121 3.9 45.0 1.0
NE2 A:HIS123 4.1 29.3 1.0
CD2 A:HIS123 4.1 29.1 1.0
CD A:ARG99 4.3 45.7 1.0
CZ A:ARG99 4.4 46.2 1.0
CG A:GLU125 4.4 34.8 1.0
NE A:ARG99 4.5 49.2 1.0
O A:HOH2120 4.8 61.9 1.0
CA A:HIS123 4.9 28.3 1.0

Zinc binding site 4 out of 8 in 2jks

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Zinc binding site 4 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1319

b:56.3
occ:1.00
OE2 A:GLU194 2.3 39.0 1.0
ND1 A:HIS312 2.6 35.3 1.0
CD A:GLU194 3.1 32.1 1.0
ND1 A:HIS315 3.4 52.7 1.0
CG A:HIS312 3.5 31.5 1.0
CG A:GLU194 3.5 33.1 1.0
CE1 A:HIS312 3.6 36.0 1.0
CB A:HIS312 3.6 29.9 1.0
CE1 A:HIS315 4.1 54.3 1.0
OE1 A:GLU194 4.1 37.5 1.0
CA A:HIS312 4.2 29.3 1.0
CG A:HIS315 4.3 49.9 1.0
CD2 A:HIS312 4.7 33.5 1.0
NE2 A:HIS312 4.7 35.9 1.0
CB A:HIS315 4.7 47.4 1.0

Zinc binding site 5 out of 8 in 2jks

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Zinc binding site 5 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1320

b:51.8
occ:1.00
OD1 A:ASP205 2.0 37.8 1.0
OE1 A:GLU96 2.2 52.1 1.0
O A:HOH2278 2.4 67.9 1.0
OE2 A:GLU96 2.6 54.7 1.0
CD A:GLU96 2.7 49.2 1.0
CG A:ASP205 2.9 36.6 1.0
OD2 A:ASP205 3.1 41.5 1.0
O A:HOH2277 3.2 68.2 1.0
O A:HOH2122 3.5 56.8 1.0
O A:HOH2185 3.8 39.1 1.0
NZ A:LYS132 4.1 36.7 1.0
CG A:GLU96 4.2 44.3 1.0
O A:HOH2187 4.2 52.9 1.0
CB A:ASP205 4.3 33.0 1.0
OG1 A:THR130 4.8 30.0 1.0
CA A:ASP205 4.8 31.4 1.0
OG A:SER204 4.9 38.3 1.0

Zinc binding site 6 out of 8 in 2jks

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Zinc binding site 6 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1321

b:62.6
occ:1.00
NE2 A:HIS314 2.1 41.7 1.0
O A:HOH2279 2.3 31.6 1.0
CD2 A:HIS314 3.0 40.4 1.0
CE1 A:HIS314 3.1 37.8 1.0
OE1 A:GLU170 4.1 53.3 1.0
CG A:HIS314 4.2 41.7 1.0
ND1 A:HIS314 4.2 41.5 1.0
CD2 A:HIS313 4.4 30.8 1.0
O A:HOH2150 4.6 58.5 1.0
NE2 A:HIS313 4.8 29.4 1.0
NZ A:LYS195 4.9 30.9 1.0
CD A:LYS195 5.0 37.1 1.0

Zinc binding site 7 out of 8 in 2jks

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Zinc binding site 7 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1322

b:50.0
occ:1.00
ZN A:ZN1318 3.0 40.8 1.0
O A:HOH2120 4.0 61.9 1.0
OE1 A:GLU125 4.0 32.3 1.0
OE2 A:GLU125 4.2 33.9 1.0
CD A:GLU125 4.4 34.4 1.0
ND1 A:HIS123 4.5 32.8 1.0

Zinc binding site 8 out of 8 in 2jks

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Zinc binding site 8 out of 8 in the Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of the the Bradyzoite Specific Antigen BSR4 From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1323

b:42.0
occ:1.00
OE2 A:GLU216 2.0 34.9 1.0
CD A:GLU216 2.7 32.9 1.0
OE1 A:GLU216 2.7 26.4 1.0
O A:HOH2213 3.2 42.1 1.0
O A:HOH2195 3.7 39.3 1.0
CG A:GLU216 4.1 29.7 1.0
O A:HOH2196 4.2 34.0 1.0
OG1 A:THR230 4.5 32.3 1.0
OG1 A:THR212 4.8 23.7 1.0
CG2 A:THR212 4.8 28.1 1.0
CB A:THR212 4.9 26.9 1.0

Reference:

J.Crawford, O.Grujic, E.Bruic, M.Czjzek, M.E.Grigg, M.J.Boulanger. Structural Characterization of the Bradyzoite Surface Antigen (BSR4) From Toxoplasma Gondii, A Unique Addition to the Surface Antigen Glycoprotein 1-Related Superfamily. J.Biol.Chem. V. 284 9192 2009.
ISSN: ISSN 0021-9258
PubMed: 19155215
DOI: 10.1074/JBC.M808714200
Page generated: Wed Dec 16 03:32:04 2020

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