Atomistry » Zinc » PDB 2ja8-2jt6 » 2jjl
Atomistry »
  Zinc »
    PDB 2ja8-2jt6 »
      2jjl »

Zinc in PDB 2jjl: Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form

Protein crystallography data

The structure of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form, PDB code: 2jjl was solved by P.Guardado-Calvo, G.C.Fox, A.L.Llamas-Saiz, J.Benavente, M.J.Van Raaij, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.30
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.657, 77.657, 121.449, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 22

Other elements in 2jjl:

The structure of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form (pdb code 2jjl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form, PDB code: 2jjl:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2jjl

Go back to Zinc Binding Sites List in 2jjl
Zinc binding site 1 out of 3 in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1330

b:70.5
occ:0.33
NE2 A:HIS158 2.1 66.3 1.0
CE1 A:HIS158 2.7 70.8 1.0
O A:HOH2202 2.7 27.3 0.3
CD2 A:HIS158 3.3 83.3 1.0
ND1 A:HIS158 3.8 78.7 1.0
CG A:HIS158 4.2 82.8 1.0
O A:LEU152 4.8 78.0 1.0

Zinc binding site 2 out of 3 in 2jjl

Go back to Zinc Binding Sites List in 2jjl
Zinc binding site 2 out of 3 in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1331

b:31.6
occ:0.50
OD1 A:ASP212 2.0 28.2 1.0
CG A:ASP212 2.8 27.4 1.0
OD2 A:ASP212 2.9 26.0 1.0
O A:THR213 3.7 27.4 1.0
O A:HOH2126 3.8 28.7 1.0
CB A:ASP212 4.3 22.0 1.0
N A:THR213 4.3 26.0 1.0
O A:ASN236 4.3 21.7 1.0
O A:HOH2089 4.4 44.5 1.0
OG1 A:THR213 4.7 26.1 1.0
C A:THR213 4.7 29.4 1.0
CA A:ASP212 4.8 25.0 1.0

Zinc binding site 3 out of 3 in 2jjl

Go back to Zinc Binding Sites List in 2jjl
Zinc binding site 3 out of 3 in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1332

b:45.0
occ:1.00
OD1 A:ASP122 2.0 28.8 1.0
CG A:ASP122 2.7 33.5 1.0
OD2 A:ASP122 2.8 42.3 1.0
CB A:ASP122 4.2 28.9 1.0
O A:HOH2001 4.9 48.2 1.0
CA A:ASP122 4.9 30.8 1.0
O A:ASP122 5.0 34.5 1.0

Reference:

P.Guardado-Calvo, G.C.Fox, A.L.Llamas-Saiz, M.J.Van Raaij. Crystallographic Structure of the Alpha-Helical Triple Coiled-Coil Domain of Avian Reovirus S1133 Fibre. J. Gen. Virol. V. 90 672 2009.
ISSN: ISSN 0022-1317
PubMed: 19218213
DOI: 10.1099/VIR.0.008276-0
Page generated: Wed Dec 16 03:32:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy