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Zinc in PDB 2jjl: Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form

Protein crystallography data

The structure of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form, PDB code: 2jjl was solved by P.Guardado-Calvo, G.C.Fox, A.L.Llamas-Saiz, J.Benavente, M.J.Van Raaij, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.30
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.657, 77.657, 121.449, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 22

Other elements in 2jjl:

The structure of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form (pdb code 2jjl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form, PDB code: 2jjl:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2jjl

Go back to Zinc Binding Sites List in 2jjl
Zinc binding site 1 out of 3 in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1330

b:70.5
occ:0.33
NE2 A:HIS158 2.1 66.3 1.0
CE1 A:HIS158 2.7 70.8 1.0
O A:HOH2202 2.7 27.3 0.3
CD2 A:HIS158 3.3 83.3 1.0
ND1 A:HIS158 3.8 78.7 1.0
CG A:HIS158 4.2 82.8 1.0
O A:LEU152 4.8 78.0 1.0

Zinc binding site 2 out of 3 in 2jjl

Go back to Zinc Binding Sites List in 2jjl
Zinc binding site 2 out of 3 in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1331

b:31.6
occ:0.50
OD1 A:ASP212 2.0 28.2 1.0
CG A:ASP212 2.8 27.4 1.0
OD2 A:ASP212 2.9 26.0 1.0
O A:THR213 3.7 27.4 1.0
O A:HOH2126 3.8 28.7 1.0
CB A:ASP212 4.3 22.0 1.0
N A:THR213 4.3 26.0 1.0
O A:ASN236 4.3 21.7 1.0
O A:HOH2089 4.4 44.5 1.0
OG1 A:THR213 4.7 26.1 1.0
C A:THR213 4.7 29.4 1.0
CA A:ASP212 4.8 25.0 1.0

Zinc binding site 3 out of 3 in 2jjl

Go back to Zinc Binding Sites List in 2jjl
Zinc binding site 3 out of 3 in the Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Avian Reovirus SIGMAC117-326, P321 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1332

b:45.0
occ:1.00
OD1 A:ASP122 2.0 28.8 1.0
CG A:ASP122 2.7 33.5 1.0
OD2 A:ASP122 2.8 42.3 1.0
CB A:ASP122 4.2 28.9 1.0
O A:HOH2001 4.9 48.2 1.0
CA A:ASP122 4.9 30.8 1.0
O A:ASP122 5.0 34.5 1.0

Reference:

P.Guardado-Calvo, G.C.Fox, A.L.Llamas-Saiz, M.J.Van Raaij. Crystallographic Structure of the Alpha-Helical Triple Coiled-Coil Domain of Avian Reovirus S1133 Fibre. J. Gen. Virol. V. 90 672 2009.
ISSN: ISSN 0022-1317
PubMed: 19218213
DOI: 10.1099/VIR.0.008276-0
Page generated: Wed Dec 16 03:32:02 2020

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