Zinc in PDB 2j6a: Crystal Structure of S. Cerevisiae YNR046W, A Zinc Finger Protein From the ERF1 Methyltransferase Complex.

The structure of Crystal Structure of S. Cerevisiae YNR046W, A Zinc Finger Protein From the ERF1 Methyltransferase Complex., PDB code: 2j6a was solved by V.Heurgue-Hamard, M.Graille, N.Scrima, N.Ulryck, S.Champ, H.Van Tilbeurgh, R.H.Buckingham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.67 / 1.7
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	92.600, 38.460, 45.810, 90.00, 102.24, 90.00
R / Rfree (%)	19.8 / 23.6

The binding sites of Zinc atom in the Crystal Structure of S. Cerevisiae YNR046W, A Zinc Finger Protein From the ERF1 Methyltransferase Complex. (pdb code 2j6a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of S. Cerevisiae YNR046W, A Zinc Finger Protein From the ERF1 Methyltransferase Complex., PDB code: 2j6a:

Zinc binding site 1 out of 1 in the Crystal Structure of S. Cerevisiae YNR046W, A Zinc Finger Protein From the ERF1 Methyltransferase Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of S. Cerevisiae YNR046W, A Zinc Finger Protein From the ERF1 Methyltransferase Complex. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1138 b:14.4 occ:1.00 SG A:CYS16 2.3 17.7 1.0 SG A:CYS112 2.4 13.1 1.0 SG A:CYS115 2.4 13.9 1.0 SG A:CYS11 2.4 15.0 1.0 CB A:CYS112 3.1 14.3 1.0 CB A:CYS115 3.2 14.8 1.0 CB A:CYS11 3.3 13.2 1.0 CB A:CYS16 3.3 19.6 1.0 N A:CYS115 3.8 16.5 1.0 CA A:CYS115 4.1 14.7 1.0 CB A:VAL13 4.4 16.5 1.0 CB A:ASN114 4.5 16.4 1.0 CA A:CYS112 4.6 13.4 1.0 CG2 A:VAL13 4.7 16.7 1.0 CA A:CYS11 4.8 13.8 1.0 CA A:CYS16 4.8 20.4 1.0 C A:ASN114 4.8 16.8 1.0 CB A:HIS117 4.8 13.5 1.0 C A:CYS115 4.8 14.2 1.0 ND2 A:ASN114 4.9 17.3 1.0 N A:GLY116 5.0 13.4 1.0

V.Heurgue-Hamard, M.Graille, N.Scrima, N.Ulryck, S.Champ, H.Van Tilbeurgh, R.H.Buckingham. The Zinc Finger Protein YNR046W Is Plurifunctional and A Component of the ERF1 Methyltransferase in Yeast. J.Biol.Chem. V. 281 36140 2006.
ISSN: ISSN 0021-9258
PubMed: 17008308
DOI: 10.1074/JBC.M608571200