Zinc in PDB 2j4x: Streptococcus Dysgalactiae-Derived Mitogen (Sdm)

The structure of Streptococcus Dysgalactiae-Derived Mitogen (Sdm), PDB code: 2j4x was solved by S.Saarinen, H.Kato, T.Uchiyama, T.Miyoshi-Akiyama, A.C.Papageorgiou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.95
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	51.868, 51.868, 62.104, 90.00, 90.00, 120.00
R / Rfree (%)	20.5 / 20.1

The binding sites of Zinc atom in the Streptococcus Dysgalactiae-Derived Mitogen (Sdm) (pdb code 2j4x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Streptococcus Dysgalactiae-Derived Mitogen (Sdm), PDB code: 2j4x:

Zinc binding site 1 out of 1 in the Streptococcus Dysgalactiae-Derived Mitogen (Sdm)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Streptococcus Dysgalactiae-Derived Mitogen (Sdm) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1211 b:52.3 occ:1.00 NE2 A:HIS200 2.1 38.8 1.0 OD2 A:ASP202 2.2 40.4 1.0 ND1 A:HIS170 2.2 44.7 1.0 CE1 A:HIS200 3.0 38.0 1.0 CE1 A:HIS170 3.0 46.3 1.0 CG A:ASP202 3.1 38.9 1.0 CD2 A:HIS200 3.2 38.3 1.0 CG A:HIS170 3.2 45.4 1.0 OD1 A:ASP202 3.3 39.4 1.0 CB A:HIS170 3.6 41.6 1.0 NE2 A:HIS170 4.1 46.9 1.0 ND1 A:HIS200 4.1 39.3 1.0 CD2 A:HIS170 4.2 45.5 1.0 CG A:HIS200 4.2 37.8 1.0 CB A:ASP202 4.5 37.4 1.0 O A:HOH2088 4.6 47.1 1.0 OH A:TYR204 4.9 45.5 1.0 OD1 A:ASN111 4.9 46.3 1.0

S.Saarinen, H.Kato, T.Uchiyama, T.Miyoshi-Akiyama, A.C.Papageorgiou. Crystal Structure of Streptococcus Dysgalactiae-Derived Mitogen Reveals A Zinc-Binding Site and Alterations in Tcr Binding. J.Mol.Biol. V. 373 1089 2007.
ISSN: ISSN 0022-2836
PubMed: 17900619
DOI: 10.1016/J.JMB.2007.08.024