Zinc in PDB 2ixd: Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus

The structure of Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus, PDB code: 2ixd was solved by V.E.Fadouloglou, V.Bouriotis, M.Kokkinidis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.81 / 1.80
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	75.892, 75.892, 404.699, 90.00, 90.00, 120.00
R / Rfree (%)	17.7 / 20.7

The binding sites of Zinc atom in the Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus (pdb code 2ixd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus, PDB code: 2ixd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1234 b:27.6 occ:1.00 OD1 A:ASP15 2.0 18.0 1.0 OXT A:ACT1235 2.0 27.2 1.0 ND1 A:HIS12 2.1 22.7 1.0 NE2 A:HIS113 2.1 20.2 1.0 O A:ACT1235 2.6 27.0 1.0 C A:ACT1235 2.6 27.5 1.0 CG A:ASP15 2.7 16.6 1.0 OD2 A:ASP15 2.8 17.1 1.0 CE1 A:HIS12 2.9 21.6 1.0 CD2 A:HIS113 3.0 19.5 1.0 CE1 A:HIS113 3.1 19.7 1.0 CG A:HIS12 3.2 21.5 1.0 CB A:HIS12 3.6 21.8 1.0 CH3 A:ACT1235 4.1 28.3 1.0 NE2 A:HIS12 4.1 22.1 1.0 ND1 A:HIS113 4.2 18.1 1.0 CG A:HIS113 4.2 17.2 1.0 OD2 A:ASP14 4.2 24.9 1.0 CB A:ASP15 4.2 16.4 1.0 N A:HIS12 4.2 19.6 1.0 CD2 A:HIS12 4.2 22.5 1.0 O A:HOH2237 4.4 26.7 1.0 ND1 A:HIS110 4.4 24.4 1.0 CA A:HIS12 4.5 20.6 1.0 CD1 A:ILE149 4.5 15.5 1.0 O A:HIS12 4.6 19.7 1.0 CE1 A:HIS110 4.6 23.8 1.0 CB A:ALA11 4.7 18.4 1.0 CA A:ASP15 4.7 16.9 1.0 CG2 A:ILE149 4.9 18.5 1.0 C A:HIS12 5.0 20.3 1.0 CG A:HIS110 5.0 21.4 1.0 N A:ASP15 5.0 18.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Putative Deacetylase BC1534 From Bacillus Cereus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1232 b:24.7 occ:1.00 OD2 B:ASP15 2.0 14.1 1.0 O B:ACT1233 2.0 23.7 1.0 NE2 B:HIS113 2.1 16.6 1.0 ND1 B:HIS12 2.1 18.1 1.0 OXT B:ACT1233 2.6 24.2 1.0 C B:ACT1233 2.6 24.6 1.0 CG B:ASP15 2.7 13.5 1.0 OD1 B:ASP15 2.7 13.9 1.0 CE1 B:HIS12 2.9 17.8 1.0 CD2 B:HIS113 3.0 15.2 1.0 CE1 B:HIS113 3.0 16.4 1.0 CG B:HIS12 3.2 17.4 1.0 CB B:HIS12 3.7 15.8 1.0 CH3 B:ACT1233 4.0 25.5 1.0 NE2 B:HIS12 4.1 17.6 1.0 ND1 B:HIS113 4.1 16.2 1.0 CB B:ASP15 4.2 11.8 1.0 CG B:HIS113 4.2 14.6 1.0 N B:HIS12 4.2 14.4 1.0 OD2 B:ASP14 4.2 19.4 1.0 CD2 B:HIS12 4.2 17.8 1.0 ND1 B:HIS110 4.4 20.3 1.0 O B:HOH2234 4.4 19.1 1.0 CA B:HIS12 4.5 15.1 1.0 CD1 B:ILE149 4.5 13.2 1.0 CE1 B:HIS110 4.6 18.6 1.0 O B:HIS12 4.6 14.2 1.0 CB B:ALA11 4.7 13.3 1.0 CA B:ASP15 4.7 12.5 1.0 O B:HOH2053 4.7 49.7 1.0 CG2 B:ILE149 4.9 14.2 1.0 C B:HIS12 5.0 14.8 1.0 CG B:HIS110 5.0 17.5 1.0 N B:ASP15 5.0 13.0 1.0

V.E.Fadouloglou, A.Deli, N.M.Glykos, E.Psylinakis, V.Bouriotis, M.Kokkinidis. Crystal Structure of the Bczbp, A Zinc-Binding Protein From Bacillus Cereus Febs J. V. 274 3044 2007.
ISSN: ISSN 1742-464X
PubMed: 17501983
DOI: 10.1111/J.1742-4658.2007.05834.X