Atomistry » Zinc » PDB 2iux-2ja7 » 2ivh
Atomistry »
  Zinc »
    PDB 2iux-2ja7 »
      2ivh »

Zinc in PDB 2ivh: Crystal Structure of the Nuclease Domain of COLE7 (H545Q Mutant) in Complex with An 18-Bp Duplex Dna

Protein crystallography data

The structure of Crystal Structure of the Nuclease Domain of COLE7 (H545Q Mutant) in Complex with An 18-Bp Duplex Dna, PDB code: 2ivh was solved by Y.T.Wang, W.J.Yang, C.L.Li, L.G.Doudeva, H.S.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.76 / 2.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.800, 106.800, 60.200, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 26.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Nuclease Domain of COLE7 (H545Q Mutant) in Complex with An 18-Bp Duplex Dna (pdb code 2ivh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Nuclease Domain of COLE7 (H545Q Mutant) in Complex with An 18-Bp Duplex Dna, PDB code: 2ivh:

Zinc binding site 1 out of 1 in 2ivh

Go back to Zinc Binding Sites List in 2ivh
Zinc binding site 1 out of 1 in the Crystal Structure of the Nuclease Domain of COLE7 (H545Q Mutant) in Complex with An 18-Bp Duplex Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Nuclease Domain of COLE7 (H545Q Mutant) in Complex with An 18-Bp Duplex Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1577

b:19.6
occ:1.00
OP1 B:DC11 1.8 22.9 1.0
NE2 A:HIS573 1.8 10.9 1.0
ND1 A:HIS544 2.0 15.6 1.0
NE2 A:HIS569 2.1 17.2 1.0
CE1 A:HIS573 2.8 21.5 1.0
CD2 A:HIS573 2.9 11.8 1.0
P B:DC11 3.0 30.5 1.0
CE1 A:HIS544 3.0 18.9 1.0
CD2 A:HIS569 3.0 22.2 1.0
CG A:HIS544 3.1 14.9 1.0
O3' B:DT10 3.2 22.4 1.0
CE1 A:HIS569 3.2 25.9 1.0
CB A:HIS544 3.5 13.7 1.0
O5' B:DC11 3.6 38.1 1.0
CA A:HIS544 3.7 19.7 1.0
ND1 A:HIS573 3.9 22.1 1.0
CG A:HIS573 4.0 14.6 1.0
N A:GLN545 4.1 21.1 1.0
NE2 A:HIS544 4.1 20.3 1.0
CD2 A:HIS544 4.2 22.1 1.0
CG A:HIS569 4.2 13.7 1.0
OP2 B:DC11 4.2 21.8 1.0
ND1 A:HIS569 4.3 22.1 1.0
C A:HIS544 4.4 22.6 1.0
C3' B:DT10 4.6 38.5 1.0
O A:GLN545 4.9 28.6 1.0
O A:LEU543 4.9 22.0 1.0
C5' B:DC11 4.9 33.2 1.0
N A:HIS544 4.9 15.3 1.0

Reference:

Y.T.Wang, W.J.Yang, C.L.Li, L.G.Doudeva, H.S.Yuan. Structural Basis For Sequence-Dependent Dna Cleavage By Nonspecific Endonucleases. Nucleic Acids Res. V. 35 584 2007.
ISSN: ISSN 0305-1048
PubMed: 17175542
DOI: 10.1093/NAR/GKL621
Page generated: Wed Dec 16 03:31:31 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy