Zinc in PDB 2iqj: Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like

The structure of Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like, PDB code: 2iqj was solved by Y.Tong, S.Dimov, L.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	34.812, 38.513, 47.386, 90.10, 108.89, 105.13
R / Rfree (%)	19.2 / 24.6

The binding sites of Zinc atom in the Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like (pdb code 2iqj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like, PDB code: 2iqj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:19.5 occ:1.00 SG A:CYS28 2.3 18.9 1.0 SG A:CYS51 2.3 17.2 1.0 SG A:CYS31 2.4 17.6 1.0 SG A:CYS48 2.4 17.4 1.0 CB A:CYS28 3.2 18.2 1.0 CB A:CYS51 3.2 18.3 1.0 CB A:CYS31 3.3 12.9 1.0 CB A:CYS48 3.6 17.6 1.0 N A:CYS31 3.7 16.3 1.0 N A:CYS48 4.0 16.9 1.0 CA A:CYS31 4.0 16.2 1.0 N A:CYS51 4.2 15.3 1.0 OG A:SER33 4.2 30.0 1.0 NE A:ARG50 4.2 21.0 1.0 CA A:CYS51 4.3 17.6 1.0 CA A:CYS48 4.3 19.5 1.0 NH2 A:ARG50 4.4 23.4 1.0 CA A:CYS28 4.6 17.8 1.0 C A:CYS31 4.7 16.7 1.0 N A:GLN32 4.8 16.4 1.0 C A:ASP30 4.8 14.8 1.0 CZ A:ARG50 4.8 23.2 1.0 CB A:ASP30 4.8 17.0 1.0 O A:CYS48 4.9 17.3 1.0 C A:CYS48 4.9 19.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:20.5 occ:1.00 SG B:CYS51 2.3 18.2 1.0 SG B:CYS28 2.3 16.6 1.0 SG B:CYS31 2.3 19.7 1.0 SG B:CYS48 2.4 18.1 1.0 CB B:CYS51 3.2 17.2 1.0 CB B:CYS28 3.3 16.1 1.0 CB B:CYS31 3.3 18.1 1.0 CB B:CYS48 3.5 18.5 1.0 N B:CYS31 3.7 15.8 1.0 N B:CYS48 3.9 17.3 1.0 CA B:CYS31 4.0 17.9 1.0 N B:CYS51 4.2 18.1 1.0 NE B:ARG50 4.2 20.3 1.0 CA B:CYS48 4.2 20.2 1.0 NH2 B:ARG50 4.3 18.9 1.0 CA B:CYS51 4.3 16.6 1.0 OG B:SER33 4.4 27.6 1.0 C B:CYS31 4.7 18.5 1.0 CA B:CYS28 4.7 17.2 1.0 N B:GLN32 4.7 15.6 1.0 CZ B:ARG50 4.8 19.7 1.0 CB B:ASP30 4.8 17.5 1.0 C B:ASP30 4.8 17.8 1.0 C B:CYS48 4.9 16.1 1.0 O B:CYS48 4.9 16.2 1.0

Y.Tong, S.Dimov, L.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park. Structure of the Gap Domain of SMAP1L (LOC64744) Stromal Membrane-Associated Protein 1-Like To Be Published.