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Zinc in PDB 2hi7: Crystal Structure of Dsba-Dsbb-Ubiquinone Complex

Protein crystallography data

The structure of Crystal Structure of Dsba-Dsbb-Ubiquinone Complex, PDB code: 2hi7 was solved by K.Inaba, S.Murakami, M.Suzuki, A.Nakagawa, E.Yamashita, K.Okada, K.Ito, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.70
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 165.500, 165.500, 65.920, 90.00, 90.00, 90.00
R / Rfree (%) 34.1 / 36.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Dsba-Dsbb-Ubiquinone Complex (pdb code 2hi7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Dsba-Dsbb-Ubiquinone Complex, PDB code: 2hi7:

Zinc binding site 1 out of 1 in 2hi7

Go back to Zinc Binding Sites List in 2hi7
Zinc binding site 1 out of 1 in the Crystal Structure of Dsba-Dsbb-Ubiquinone Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Dsba-Dsbb-Ubiquinone Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn190

b:0.7
occ:0.50
NE2 A:HIS41 2.4 0.5 1.0
CE1 A:HIS41 2.8 0.5 1.0
O A:GLU38 3.6 0.7 1.0
CD2 A:HIS41 3.7 0.2 1.0
ND1 A:HIS41 4.1 0.4 1.0
O A:VAL39 4.3 0.5 1.0
CG A:HIS41 4.5 0.2 1.0
C A:GLU38 4.8 0.5 1.0
C A:VAL39 4.9 0.5 1.0
CA A:VAL39 5.0 0.9 1.0

Reference:

K.Inaba, S.Murakami, M.Suzuki, A.Nakagawa, E.Yamashita, K.Okada, K.Ito. Crystal Structure of the Dsbb-Dsba Complex Reveals A Mechanism of Disulfide Bond Generation Cell(Cambridge,Mass.) V. 127 789 2006.
ISSN: ISSN 0092-8674
PubMed: 17110337
DOI: 10.1016/J.CELL.2006.10.034
Page generated: Wed Dec 16 03:30:11 2020

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