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Zinc in PDB 2hcm: Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium

Protein crystallography data

The structure of Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium, PDB code: 2hcm was solved by Y.Patskovsky, S.C.Almo, S.K.Burley, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.207, 53.207, 174.485, 90.00, 90.00, 120.00
R / Rfree (%) 15 / 19.6

Other elements in 2hcm:

The structure of Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium also contains other interesting chemical elements:

Tungsten (W) 1 atom
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium (pdb code 2hcm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium, PDB code: 2hcm:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2hcm

Go back to Zinc Binding Sites List in 2hcm
Zinc binding site 1 out of 2 in the Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn367

b:41.5
occ:0.90
O1 A:WO4366 1.7 68.5 0.9
ZN A:ZN368 2.5 45.5 0.9
O A:HOH469 3.1 41.7 1.0
W A:WO4366 3.1 28.0 0.9
NH1 A:ARG45 3.3 37.8 0.5
O3 A:WO4366 3.5 27.1 0.9
O A:HOH470 3.6 44.4 1.0
O A:HOH507 3.9 49.6 1.0
O2 A:WO4366 3.9 39.1 0.9
O4 A:WO4366 4.4 31.6 0.9
CZ A:ARG45 4.4 47.3 0.5
NH2 A:ARG45 4.7 47.3 0.5

Zinc binding site 2 out of 2 in 2hcm

Go back to Zinc Binding Sites List in 2hcm
Zinc binding site 2 out of 2 in the Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn368

b:45.5
occ:0.90
O1 A:WO4366 1.6 68.5 0.9
ZN A:ZN367 2.5 41.5 0.9
W A:WO4366 3.1 28.0 0.9
O A:HOH469 3.1 41.7 1.0
O4 A:WO4366 3.6 31.6 0.9
O2 A:WO4366 3.9 39.1 0.9
NE2 A:GLN47 4.0 23.7 1.0
NZ A:LYS96 4.0 46.7 1.0
O3 A:WO4366 4.5 27.1 0.9
O A:HOH470 4.5 44.4 1.0
CE A:LYS96 4.6 37.6 1.0
CD A:LYS96 4.7 28.5 1.0
CG A:GLN46 4.9 53.3 1.0
CB A:GLN46 4.9 34.9 1.0
NH1 A:ARG45 5.0 37.8 0.5

Reference:

S.C.Almo, J.B.Bonanno, J.M.Sauder, S.Emtage, T.P.Dilorenzo, V.Malashkevich, S.R.Wasserman, S.Swaminathan, S.Eswaramoorthy, R.Agarwal, D.Kumaran, M.Madegowda, S.Ragumani, Y.Patskovsky, J.Alvarado, U.A.Ramagopal, J.Faber-Barata, M.R.Chance, A.Sali, A.Fiser, Z.Y.Zhang, D.S.Lawrence, S.K.Burley. Structural Genomics of Protein Phosphatases. J.Struct.Funct.Genom. V. 8 121 2007.
ISSN: ISSN 1345-711X
PubMed: 18058037
DOI: 10.1007/S10969-007-9036-1
Page generated: Wed Dec 16 03:30:04 2020

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