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Zinc in PDB 2h5a: Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate

Enzymatic activity of Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate

All present enzymatic activity of Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate:
5.4.2.2; 5.4.2.8;

Protein crystallography data

The structure of Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate, PDB code: 2h5a was solved by C.Regni, G.S.Shackelford, L.J.Beamer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.80 / 1.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.008, 74.551, 86.091, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate (pdb code 2h5a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate, PDB code: 2h5a:

Zinc binding site 1 out of 1 in 2h5a

Go back to Zinc Binding Sites List in 2h5a
Zinc binding site 1 out of 1 in the Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex of the Enzyme Pmm/Pgm with Xylose 1-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Zn700

b:23.3
occ:1.00
OD1 X:ASP246 1.9 15.5 1.0
O3P X:SEP108 1.9 31.7 1.0
OD2 X:ASP242 2.0 15.5 1.0
OD1 X:ASP244 2.0 17.6 1.0
CG X:ASP246 2.9 15.8 1.0
CG X:ASP242 2.9 15.5 1.0
CG X:ASP244 2.9 16.1 1.0
OD1 X:ASP242 3.1 14.8 1.0
P X:SEP108 3.1 31.2 1.0
OD2 X:ASP244 3.2 17.3 1.0
OG X:SEP108 3.2 29.7 1.0
OD2 X:ASP246 3.2 18.9 1.0
NZ X:LYS118 3.9 23.3 1.0
CB X:SEP108 3.9 25.4 1.0
CA X:SEP108 4.1 24.9 1.0
CG X:ARG247 4.1 19.2 1.0
O1P X:SEP108 4.2 33.8 1.0
O2P X:SEP108 4.2 31.4 1.0
N X:ASP246 4.2 14.6 1.0
CB X:ASP246 4.2 15.1 1.0
CB X:ASP242 4.3 15.2 1.0
CE1 X:HIS329 4.3 18.0 1.0
CB X:ASP244 4.3 15.9 1.0
N X:ARG247 4.5 15.4 1.0
N X:ASP244 4.5 15.8 1.0
C X:SEP108 4.5 25.5 1.0
CA X:ASP246 4.5 14.6 1.0
NE X:ARG247 4.6 30.6 1.0
CD X:ARG247 4.6 24.8 1.0
C X:ASP246 4.7 15.1 1.0
NE2 X:HIS329 4.7 18.4 1.0
N X:HIS109 4.7 26.1 1.0
CA X:ASP244 4.7 15.3 1.0
CB X:ARG247 4.8 15.8 1.0
N X:GLY245 4.8 14.1 1.0
C X:ASP244 4.9 15.0 1.0

Reference:

C.Regni, G.S.Shackelford, L.J.Beamer. Complexes of the Enzyme Phosphomannomutase/Phosphoglucomutase with A Slow Substrate and An Inhibitor. Acta Crystallogr.,Sect.F V. 62 722 2006.
ISSN: ESSN 1744-3091
PubMed: 16880541
DOI: 10.1107/S1744309106025887
Page generated: Sat Sep 26 02:14:36 2020
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