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Zinc in PDB 2gwn: The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis.

Protein crystallography data

The structure of The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis., PDB code: 2gwn was solved by M.E.Cuff, M.Borovilos, S.Moy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.10 / 1.85
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 86.459, 86.873, 114.581, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 19.4

Other elements in 2gwn:

The structure of The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis. also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis. (pdb code 2gwn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis., PDB code: 2gwn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2gwn

Go back to Zinc Binding Sites List in 2gwn
Zinc binding site 1 out of 2 in the The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:23.2
occ:0.60
OQ2 A:KCX149 1.9 13.5 0.7
O A:HOH976 2.1 33.4 1.0
ND1 A:HIS181 2.1 12.3 1.0
O2 A:CAC603 2.2 34.0 0.6
NE2 A:HIS239 2.3 12.9 1.0
CX A:KCX149 3.0 16.9 0.7
CE1 A:HIS181 3.0 13.7 1.0
CE1 A:HIS239 3.2 11.4 1.0
CG A:HIS181 3.2 10.9 1.0
OQ1 A:KCX149 3.3 15.5 0.7
CD2 A:HIS239 3.3 11.2 1.0
ZN A:ZN602 3.4 25.6 0.7
AS A:CAC603 3.6 37.9 0.6
CB A:HIS181 3.7 9.8 1.0
NE2 A:GLN63 3.7 16.0 1.0
O1 A:CAC603 4.0 34.2 0.6
NE2 A:HIS181 4.1 13.2 1.0
NZ A:KCX149 4.2 17.6 1.0
C2 A:CAC603 4.2 34.0 0.6
CD2 A:HIS181 4.3 14.7 1.0
ND1 A:HIS239 4.4 12.0 1.0
O A:ASN286 4.4 12.5 1.0
CE1 A:PHE151 4.4 21.6 1.0
CG A:HIS239 4.4 11.0 1.0
OD2 A:ASP313 4.5 16.4 1.0
CD1 A:PHE151 4.7 21.1 1.0
CE A:KCX149 4.7 15.4 1.0
CA A:HIS181 4.7 10.1 1.0
OD1 A:ASP313 4.9 18.5 1.0
CD A:GLN63 4.9 13.8 1.0

Zinc binding site 2 out of 2 in 2gwn

Go back to Zinc Binding Sites List in 2gwn
Zinc binding site 2 out of 2 in the The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:25.6
occ:0.70
O A:HOH976 2.0 33.4 1.0
OQ1 A:KCX149 2.0 15.5 0.7
NE2 A:GLN63 2.0 16.0 1.0
OD1 A:ASP313 2.1 18.5 1.0
NE2 A:HIS65 2.2 16.7 1.0
CG A:ASP313 3.0 14.6 1.0
CX A:KCX149 3.0 16.9 0.7
CE1 A:HIS65 3.0 15.5 1.0
CD A:GLN63 3.1 13.8 1.0
CD2 A:HIS65 3.3 16.5 1.0
OQ2 A:KCX149 3.3 13.5 0.7
OD2 A:ASP313 3.3 16.4 1.0
ZN A:ZN601 3.4 23.2 0.6
CG A:GLN63 3.4 11.2 1.0
C2 A:CAC603 4.0 34.0 0.6
OE1 A:GLN63 4.1 16.3 1.0
NZ A:KCX149 4.2 17.6 1.0
CD2 A:HIS239 4.2 11.2 1.0
ND1 A:HIS65 4.2 13.5 1.0
CB A:ASP313 4.2 12.9 1.0
O2 A:CAC603 4.3 34.0 0.6
NE2 A:HIS239 4.3 12.9 1.0
CG A:HIS65 4.4 13.3 1.0
CG A:MSE95 4.5 14.6 1.0
O A:HOH863 4.6 40.1 1.0
CA A:ASP313 4.7 13.5 1.0
CB A:GLN63 4.9 10.9 1.0
AS A:CAC603 4.9 37.9 0.6

Reference:

M.E.Cuff, M.Borovilos, S.Moy, A.Joachimiak. The Structure of Putative Dihydroorotase From Porphyromonas Gingivalis. To Be Published.
Page generated: Wed Dec 16 03:29:41 2020

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