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Zinc in PDB 2gda: Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain

Zinc Binding Sites:

The binding sites of Zinc atom in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain (pdb code 2gda). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain, PDB code: 2gda:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2gda

Go back to Zinc Binding Sites List in 2gda
Zinc binding site 1 out of 2 in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn73

b:0.0
occ:1.00
SG A:CYS22 2.3 0.0 1.0
SG A:CYS5 2.3 0.0 1.0
SG A:CYS2 2.3 0.0 1.0
SG A:CYS19 2.3 0.0 1.0
H A:CYS5 3.1 0.0 1.0
H A:CYS19 3.2 0.0 1.0
HB2 A:CYS22 3.2 0.0 1.0
CB A:CYS22 3.4 0.0 1.0
HB A:VAL4 3.4 0.0 1.0
CB A:CYS19 3.6 0.0 1.0
HB3 A:CYS19 3.6 0.0 1.0
CB A:CYS2 3.6 0.0 1.0
CB A:CYS5 3.7 0.0 1.0
H A:CYS22 3.7 0.0 1.0
HB2 A:CYS2 3.7 0.0 1.0
HB3 A:CYS2 3.8 0.0 1.0
N A:CYS5 3.9 0.0 1.0
HB3 A:CYS5 3.9 0.0 1.0
N A:CYS19 4.0 0.0 1.0
HB3 A:ASP7 4.1 0.0 1.0
HB3 A:CYS22 4.2 0.0 1.0
CA A:CYS5 4.2 0.0 1.0
N A:CYS22 4.3 0.0 1.0
CA A:CYS19 4.3 0.0 1.0
CA A:CYS22 4.3 0.0 1.0
HH21 A:ARG58 4.3 0.0 1.0
HB3 A:SER21 4.4 0.0 1.0
HB2 A:CYS19 4.5 0.0 1.0
HG22 A:THR18 4.5 0.0 1.0
CB A:VAL4 4.5 0.0 1.0
HA A:CYS22 4.6 0.0 1.0
HB2 A:CYS5 4.6 0.0 1.0
H A:VAL4 4.6 0.0 1.0
C A:CYS5 4.7 0.0 1.0
HB A:THR18 4.7 0.0 1.0
NH2 A:ARG58 4.8 0.0 1.0
HA A:THR18 4.8 0.0 1.0
HG22 A:VAL4 4.9 0.0 1.0
HB2 A:ASP7 4.9 0.0 1.0
HG12 A:VAL4 5.0 0.0 1.0
H A:ASP7 5.0 0.0 1.0
HH22 A:ARG58 5.0 0.0 1.0
CA A:CYS2 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2gda

Go back to Zinc Binding Sites List in 2gda
Zinc binding site 2 out of 2 in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn74

b:0.0
occ:1.00
SG A:CYS57 2.3 0.0 1.0
SG A:CYS38 2.3 0.0 1.0
SG A:CYS54 2.3 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
CB A:CYS38 3.2 0.0 1.0
HB2 A:CYS38 3.3 0.0 1.0
HB3 A:CYS38 3.3 0.0 1.0
CB A:CYS54 3.3 0.0 1.0
HB3 A:CYS54 3.4 0.0 1.0
HB2 A:CYS54 3.4 0.0 1.0
H A:CYS57 3.5 0.0 1.0
HB2 A:CYS57 3.6 0.0 1.0
HB3 A:ALA56 3.6 0.0 1.0
CB A:CYS57 3.7 0.0 1.0
H A:CYS44 3.7 0.0 1.0
CB A:CYS44 3.8 0.0 1.0
HB2 A:CYS44 4.0 0.0 1.0
H A:ASP43 4.0 0.0 1.0
N A:CYS57 4.2 0.0 1.0
N A:CYS44 4.3 0.0 1.0
HA A:ASN42 4.3 0.0 1.0
HD13 A:ILE46 4.3 0.0 1.0
OD1 A:ASP43 4.4 0.0 1.0
HD11 A:ILE46 4.4 0.0 1.0
O A:CYS44 4.5 0.0 1.0
CA A:CYS44 4.5 0.0 1.0
CA A:CYS57 4.5 0.0 1.0
HB3 A:CYS57 4.5 0.0 1.0
H A:ALA56 4.6 0.0 1.0
HB3 A:CYS44 4.6 0.0 1.0
H A:ASN42 4.6 0.0 1.0
CA A:CYS38 4.7 0.0 1.0
CB A:ALA56 4.7 0.0 1.0
HA A:CYS57 4.7 0.0 1.0
C A:CYS44 4.8 0.0 1.0
CA A:CYS54 4.8 0.0 1.0
CD1 A:ILE46 4.9 0.0 1.0
N A:ASP43 4.9 0.0 1.0
HB2 A:ARG41 5.0 0.0 1.0

Reference:

H.Baumann, K.Paulsen, H.Kovacs, H.Berglund, A.P.Wright, J.A.Gustafsson, T.Hard. Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain. Biochemistry V. 32 13463 1993.
ISSN: ISSN 0006-2960
PubMed: 8257681
DOI: 10.1021/BI00212A011
Page generated: Wed Dec 16 03:29:28 2020

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