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Zinc in PDB 2gc0: The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc

Enzymatic activity of The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc

All present enzymatic activity of The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc:
5.3.1.9;

Protein crystallography data

The structure of The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc, PDB code: 2gc0 was solved by J.M.Berrisford, D.W.Rice, P.J.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.41 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.149, 73.112, 74.159, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 24.1

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc (pdb code 2gc0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc, PDB code: 2gc0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2gc0

Go back to Zinc Binding Sites List in 2gc0
Zinc binding site 1 out of 2 in the The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:21.0
occ:1.00
NE2 A:HIS136 2.1 15.2 1.0
OE2 A:GLU97 2.2 26.9 1.0
NE2 A:HIS88 2.3 17.1 1.0
NE2 A:HIS90 2.3 17.5 1.0
ON1 A:PAN901 2.3 34.4 1.0
O1 A:PAN901 2.4 15.3 1.0
CE1 A:HIS136 2.9 4.4 1.0
N A:PAN901 3.1 18.5 1.0
CD2 A:HIS90 3.1 13.6 1.0
C1 A:PAN901 3.1 14.6 1.0
CE1 A:HIS88 3.1 9.5 1.0
CD2 A:HIS136 3.2 11.1 1.0
CD A:GLU97 3.2 27.6 1.0
CD2 A:HIS88 3.3 15.5 1.0
CE1 A:HIS90 3.4 14.7 1.0
OE1 A:GLU97 3.6 35.1 1.0
ND1 A:HIS136 4.1 12.4 1.0
O A:HOH949 4.1 22.8 1.0
ND1 A:HIS88 4.2 14.5 1.0
CG A:HIS90 4.3 17.9 1.0
CG A:HIS136 4.3 12.4 1.0
CG A:HIS88 4.3 19.3 1.0
ND1 A:HIS90 4.4 16.1 1.0
OH A:TYR99 4.5 20.0 1.0
C2 A:PAN901 4.5 19.1 1.0
CG A:GLU97 4.6 14.1 1.0
NE2 A:HIS158 4.7 38.7 1.0
CD2 A:HIS158 4.7 35.4 1.0
CB A:GLU97 4.8 9.5 1.0
O3 A:PAN901 4.9 17.1 1.0
C3 A:PAN901 5.0 20.7 1.0

Zinc binding site 2 out of 2 in 2gc0

Go back to Zinc Binding Sites List in 2gc0
Zinc binding site 2 out of 2 in the The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Phosphoglucose Isomerase From Pyrococcus Furiosus in Complex with 5-Phospho-D- Arabinonohydroxamate and Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn800

b:19.0
occ:1.00
NE2 B:HIS136 2.1 10.8 1.0
NE2 B:HIS90 2.2 12.5 1.0
OE2 B:GLU97 2.3 21.4 1.0
NE2 B:HIS88 2.3 18.1 1.0
ON1 B:PAN902 2.4 34.2 1.0
O1 B:PAN902 2.5 10.8 1.0
CE1 B:HIS88 3.1 19.1 1.0
CE1 B:HIS136 3.1 6.7 1.0
CD2 B:HIS90 3.1 11.5 1.0
N B:PAN902 3.1 34.3 1.0
C1 B:PAN902 3.1 16.0 1.0
CD2 B:HIS136 3.2 6.3 1.0
CD B:GLU97 3.2 10.4 1.0
CE1 B:HIS90 3.3 15.8 1.0
CD2 B:HIS88 3.4 7.6 1.0
OE1 B:GLU97 3.5 34.9 1.0
ND1 B:HIS136 4.2 16.3 1.0
ND1 B:HIS88 4.2 20.6 1.0
CG B:HIS90 4.2 8.3 1.0
ND1 B:HIS90 4.3 18.1 1.0
CG B:HIS136 4.3 9.0 1.0
O B:HOH949 4.3 32.5 1.0
CG B:HIS88 4.4 17.8 1.0
CD2 B:HIS158 4.5 30.4 1.0
C2 B:PAN902 4.6 22.8 1.0
CG B:GLU97 4.6 8.7 1.0
OH B:TYR99 4.6 13.4 1.0
NE2 B:HIS158 4.6 41.5 1.0
CB B:GLU97 4.9 12.9 1.0
O3 B:PAN902 5.0 16.9 1.0

Reference:

J.M.Berrisford, A.M.Hounslow, J.Akerboom, W.R.Hagen, S.J.Brouns, J.Van Der Oost, I.A.Murray, G.Michael Blackburn, J.P.Waltho, D.W.Rice, P.J.Baker. Evidence Supporting A Cis-Enediol-Based Mechanism For Pyrococcus Furiosus Phosphoglucose Isomerase J.Mol.Biol. V. 358 1353 2006.
ISSN: ISSN 0022-2836
PubMed: 16580686
DOI: 10.1016/J.JMB.2006.03.015
Page generated: Sat Sep 26 02:06:07 2020
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