Zinc in PDB 2gbv: C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
Enzymatic activity of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
All present enzymatic activity of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase:
1.15.1.1;
Protein crystallography data
The structure of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase, PDB code: 2gbv
was solved by
A.Hornberg,
D.T.Logan,
S.L.Marklund,
M.Oliveberg,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.88 /
2.00
|
|
Space group
|
C 2 2 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
166.800,
202.370,
143.640,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
18.3 /
20.7
|
Other elements in 2gbv:
The structure of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
(pdb code 2gbv). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the
C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase, PDB code: 2gbv:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 1 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn155
b:22.1
occ:0.95
|
OD1
|
A:ASP83
|
1.9
|
28.6
|
1.0
|
|
ND1
|
A:HIS80
|
2.0
|
28.9
|
1.0
|
|
ND1
|
A:HIS63
|
2.1
|
28.3
|
1.0
|
|
ND1
|
A:HIS71
|
2.2
|
26.4
|
1.0
|
|
CG
|
A:ASP83
|
2.7
|
29.0
|
1.0
|
|
OD2
|
A:ASP83
|
2.9
|
28.5
|
1.0
|
|
CE1
|
A:HIS80
|
2.9
|
29.1
|
1.0
|
|
CG
|
A:HIS63
|
3.0
|
28.6
|
1.0
|
|
CE1
|
A:HIS71
|
3.1
|
27.9
|
1.0
|
|
CE1
|
A:HIS63
|
3.1
|
28.7
|
1.0
|
|
CG
|
A:HIS80
|
3.1
|
28.5
|
1.0
|
|
CG
|
A:HIS71
|
3.2
|
28.2
|
1.0
|
|
CB
|
A:HIS63
|
3.3
|
28.6
|
1.0
|
|
CB
|
A:HIS80
|
3.6
|
29.2
|
1.0
|
|
CB
|
A:HIS71
|
3.6
|
28.4
|
1.0
|
|
CA
|
A:HIS71
|
3.9
|
29.1
|
1.0
|
|
O
|
A:LYS136
|
4.0
|
31.2
|
1.0
|
|
NE2
|
A:HIS80
|
4.0
|
27.7
|
1.0
|
|
CD2
|
A:HIS80
|
4.1
|
28.3
|
1.0
|
|
CB
|
A:ASP83
|
4.2
|
29.2
|
1.0
|
|
CD2
|
A:HIS63
|
4.2
|
29.6
|
1.0
|
|
NE2
|
A:HIS63
|
4.2
|
29.1
|
1.0
|
|
NE2
|
A:HIS71
|
4.2
|
26.6
|
1.0
|
|
CD2
|
A:HIS71
|
4.3
|
26.8
|
1.0
|
|
N
|
A:GLY72
|
4.7
|
29.3
|
1.0
|
|
CA
|
A:ASP83
|
4.7
|
29.6
|
1.0
|
|
N
|
A:HIS80
|
4.7
|
29.4
|
1.0
|
|
CA
|
A:HIS80
|
4.8
|
29.4
|
1.0
|
|
O
|
A:HOH1424
|
4.8
|
25.5
|
1.0
|
|
CD2
|
A:HIS46
|
4.8
|
30.8
|
1.0
|
|
CA
|
A:HIS63
|
4.9
|
28.5
|
1.0
|
|
C
|
A:HIS71
|
4.9
|
29.0
|
1.0
|
|
N
|
A:ASP83
|
4.9
|
29.5
|
1.0
|
|
O
|
A:GLY72
|
4.9
|
30.1
|
1.0
|
|
N
|
A:HIS71
|
4.9
|
29.1
|
1.0
|
|
Zinc binding site 2 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 2 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn155
b:36.3
occ:0.89
|
OD1
|
B:ASP83
|
1.9
|
18.3
|
1.0
|
|
ND1
|
B:HIS80
|
2.0
|
30.5
|
1.0
|
|
ND1
|
B:HIS63
|
2.2
|
27.5
|
1.0
|
|
ND1
|
B:HIS71
|
2.5
|
30.5
|
1.0
|
|
CG
|
B:ASP83
|
2.7
|
28.6
|
1.0
|
|
OD2
|
B:ASP83
|
2.8
|
29.0
|
1.0
|
|
CE1
|
B:HIS80
|
2.8
|
30.5
|
1.0
|
|
CG
|
B:HIS63
|
3.0
|
27.9
|
1.0
|
|
CG
|
B:HIS80
|
3.1
|
30.6
|
1.0
|
|
CB
|
B:HIS63
|
3.2
|
27.7
|
1.0
|
|
CE1
|
B:HIS63
|
3.2
|
27.5
|
1.0
|
|
CG
|
B:HIS71
|
3.3
|
30.8
|
1.0
|
|
CB
|
B:HIS71
|
3.4
|
31.0
|
1.0
|
|
O
|
B:LYS136
|
3.5
|
31.3
|
1.0
|
|
CB
|
B:HIS80
|
3.6
|
30.8
|
1.0
|
|
CE1
|
B:HIS71
|
3.6
|
30.9
|
1.0
|
|
CA
|
B:HIS71
|
3.8
|
31.0
|
1.0
|
|
NE2
|
B:HIS80
|
3.9
|
30.4
|
1.0
|
|
CD2
|
B:HIS80
|
4.1
|
30.5
|
1.0
|
|
CB
|
B:ASP83
|
4.1
|
29.2
|
1.0
|
|
CD2
|
B:HIS63
|
4.2
|
27.9
|
1.0
|
|
NE2
|
B:HIS63
|
4.2
|
27.3
|
1.0
|
|
CD2
|
B:HIS71
|
4.6
|
31.1
|
1.0
|
|
C
|
B:LYS136
|
4.6
|
31.7
|
1.0
|
|
NE2
|
B:HIS71
|
4.6
|
31.1
|
1.0
|
|
CA
|
B:ASP83
|
4.7
|
29.9
|
1.0
|
|
N
|
B:HIS71
|
4.7
|
30.9
|
1.0
|
|
N
|
B:HIS80
|
4.7
|
31.2
|
1.0
|
|
CA
|
B:HIS63
|
4.7
|
27.9
|
1.0
|
|
CA
|
B:HIS80
|
4.8
|
30.9
|
1.0
|
|
N
|
B:GLY72
|
4.8
|
31.1
|
1.0
|
|
C
|
B:HIS71
|
4.9
|
30.9
|
1.0
|
|
N
|
B:ASP83
|
4.9
|
29.8
|
1.0
|
|
Zinc binding site 3 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 3 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn155
b:20.0
occ:1.00
|
OD1
|
C:ASP83
|
1.9
|
28.1
|
1.0
|
|
ND1
|
C:HIS80
|
2.0
|
29.0
|
1.0
|
|
ND1
|
C:HIS63
|
2.1
|
28.5
|
1.0
|
|
ND1
|
C:HIS71
|
2.1
|
28.9
|
1.0
|
|
CG
|
C:ASP83
|
2.7
|
29.7
|
1.0
|
|
OD2
|
C:ASP83
|
2.9
|
29.9
|
1.0
|
|
CE1
|
C:HIS80
|
2.9
|
29.3
|
1.0
|
|
CE1
|
C:HIS71
|
3.0
|
29.8
|
1.0
|
|
CG
|
C:HIS63
|
3.1
|
29.3
|
1.0
|
|
CE1
|
C:HIS63
|
3.1
|
29.8
|
1.0
|
|
CG
|
C:HIS80
|
3.1
|
28.9
|
1.0
|
|
CG
|
C:HIS71
|
3.2
|
29.8
|
1.0
|
|
CB
|
C:HIS63
|
3.3
|
29.5
|
1.0
|
|
CB
|
C:HIS80
|
3.6
|
29.1
|
1.0
|
|
CB
|
C:HIS71
|
3.6
|
29.7
|
1.0
|
|
O
|
C:LYS136
|
3.8
|
31.7
|
1.0
|
|
CA
|
C:HIS71
|
3.9
|
30.0
|
1.0
|
|
NE2
|
C:HIS80
|
4.0
|
28.6
|
1.0
|
|
NE2
|
C:HIS71
|
4.1
|
28.5
|
1.0
|
|
CB
|
C:ASP83
|
4.1
|
29.6
|
1.0
|
|
CD2
|
C:HIS80
|
4.2
|
28.3
|
1.0
|
|
CD2
|
C:HIS63
|
4.2
|
30.2
|
1.0
|
|
NE2
|
C:HIS63
|
4.2
|
28.9
|
1.0
|
|
CD2
|
C:HIS71
|
4.3
|
29.3
|
1.0
|
|
CA
|
C:ASP83
|
4.6
|
30.1
|
1.0
|
|
N
|
C:HIS80
|
4.7
|
29.3
|
1.0
|
|
O
|
C:HOH1162
|
4.7
|
20.8
|
1.0
|
|
N
|
C:GLY72
|
4.7
|
29.4
|
1.0
|
|
CA
|
C:HIS80
|
4.7
|
29.4
|
1.0
|
|
C
|
C:LYS136
|
4.8
|
31.7
|
1.0
|
|
N
|
C:ASP83
|
4.8
|
30.0
|
1.0
|
|
CA
|
C:HIS63
|
4.9
|
29.1
|
1.0
|
|
C
|
C:HIS71
|
4.9
|
29.5
|
1.0
|
|
N
|
C:HIS71
|
4.9
|
30.2
|
1.0
|
|
CD2
|
C:HIS46
|
5.0
|
30.5
|
1.0
|
|
Zinc binding site 4 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 4 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn155
b:26.3
occ:0.95
|
OD1
|
D:ASP83
|
1.9
|
24.6
|
1.0
|
|
ND1
|
D:HIS80
|
2.1
|
29.1
|
1.0
|
|
ND1
|
D:HIS63
|
2.1
|
28.1
|
1.0
|
|
ND1
|
D:HIS71
|
2.1
|
29.3
|
1.0
|
|
CG
|
D:ASP83
|
2.7
|
29.7
|
1.0
|
|
OD2
|
D:ASP83
|
2.9
|
28.9
|
1.0
|
|
CE1
|
D:HIS80
|
2.9
|
29.2
|
1.0
|
|
CE1
|
D:HIS71
|
3.0
|
30.3
|
1.0
|
|
CG
|
D:HIS63
|
3.0
|
28.0
|
1.0
|
|
CE1
|
D:HIS63
|
3.1
|
28.1
|
1.0
|
|
CG
|
D:HIS80
|
3.1
|
29.1
|
1.0
|
|
CG
|
D:HIS71
|
3.2
|
30.2
|
1.0
|
|
CB
|
D:HIS63
|
3.3
|
28.6
|
1.0
|
|
CB
|
D:HIS80
|
3.5
|
29.5
|
1.0
|
|
CB
|
D:HIS71
|
3.7
|
30.3
|
1.0
|
|
O
|
D:LYS136
|
3.8
|
30.6
|
1.0
|
|
CA
|
D:HIS71
|
4.0
|
30.4
|
1.0
|
|
NE2
|
D:HIS80
|
4.0
|
29.0
|
1.0
|
|
CD2
|
D:HIS80
|
4.1
|
28.7
|
1.0
|
|
CB
|
D:ASP83
|
4.1
|
29.7
|
1.0
|
|
CD2
|
D:HIS63
|
4.1
|
28.2
|
1.0
|
|
NE2
|
D:HIS63
|
4.1
|
27.4
|
1.0
|
|
NE2
|
D:HIS71
|
4.2
|
29.3
|
1.0
|
|
CD2
|
D:HIS71
|
4.3
|
29.8
|
1.0
|
|
O
|
D:HOH986
|
4.5
|
30.2
|
1.0
|
|
CA
|
D:ASP83
|
4.7
|
30.0
|
1.0
|
|
N
|
D:GLY72
|
4.7
|
30.0
|
1.0
|
|
N
|
D:HIS80
|
4.7
|
30.0
|
1.0
|
|
CA
|
D:HIS80
|
4.7
|
29.8
|
1.0
|
|
CA
|
D:HIS63
|
4.8
|
28.5
|
1.0
|
|
CD2
|
D:HIS46
|
4.9
|
30.4
|
1.0
|
|
N
|
D:ASP83
|
4.9
|
30.2
|
1.0
|
|
C
|
D:LYS136
|
4.9
|
31.3
|
1.0
|
|
C
|
D:HIS71
|
4.9
|
30.2
|
1.0
|
|
Zinc binding site 5 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 5 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn155
b:32.5
occ:0.98
|
OD1
|
E:ASP83
|
1.9
|
27.5
|
1.0
|
|
ND1
|
E:HIS63
|
2.1
|
30.2
|
1.0
|
|
ND1
|
E:HIS71
|
2.1
|
28.8
|
1.0
|
|
ND1
|
E:HIS80
|
2.2
|
29.0
|
1.0
|
|
CG
|
E:ASP83
|
2.8
|
28.6
|
1.0
|
|
OD2
|
E:ASP83
|
2.9
|
28.9
|
1.0
|
|
CE1
|
E:HIS71
|
2.9
|
28.9
|
1.0
|
|
CG
|
E:HIS63
|
3.0
|
29.9
|
1.0
|
|
CE1
|
E:HIS80
|
3.0
|
28.6
|
1.0
|
|
CE1
|
E:HIS63
|
3.0
|
30.6
|
1.0
|
|
CG
|
E:HIS80
|
3.1
|
29.1
|
1.0
|
|
CG
|
E:HIS71
|
3.2
|
29.0
|
1.0
|
|
CB
|
E:HIS63
|
3.3
|
29.9
|
1.0
|
|
CB
|
E:HIS80
|
3.5
|
29.2
|
1.0
|
|
CB
|
E:HIS71
|
3.7
|
29.0
|
1.0
|
|
O
|
E:LYS136
|
3.8
|
31.9
|
1.0
|
|
CA
|
E:HIS71
|
4.0
|
29.1
|
1.0
|
|
NE2
|
E:HIS80
|
4.1
|
28.4
|
1.0
|
|
NE2
|
E:HIS63
|
4.1
|
29.8
|
1.0
|
|
NE2
|
E:HIS71
|
4.1
|
28.2
|
1.0
|
|
CD2
|
E:HIS63
|
4.1
|
30.0
|
1.0
|
|
CD2
|
E:HIS80
|
4.2
|
28.6
|
1.0
|
|
CB
|
E:ASP83
|
4.2
|
28.7
|
1.0
|
|
CD2
|
E:HIS71
|
4.3
|
29.1
|
1.0
|
|
O
|
E:HOH224
|
4.5
|
42.1
|
1.0
|
|
N
|
E:HIS80
|
4.7
|
29.4
|
1.0
|
|
CA
|
E:ASP83
|
4.7
|
28.9
|
1.0
|
|
CA
|
E:HIS80
|
4.7
|
29.4
|
1.0
|
|
N
|
E:GLY72
|
4.7
|
28.9
|
1.0
|
|
CD2
|
E:HIS46
|
4.8
|
30.0
|
1.0
|
|
CA
|
E:HIS63
|
4.9
|
30.0
|
1.0
|
|
C
|
E:HIS71
|
4.9
|
28.9
|
1.0
|
|
N
|
E:ASP83
|
4.9
|
28.9
|
1.0
|
|
C
|
E:LYS136
|
4.9
|
32.3
|
1.0
|
|
Zinc binding site 6 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 6 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn155
b:18.2
occ:0.97
|
OD1
|
F:ASP83
|
1.9
|
27.3
|
1.0
|
|
ND1
|
F:HIS71
|
2.0
|
28.6
|
1.0
|
|
ND1
|
F:HIS63
|
2.1
|
29.9
|
1.0
|
|
ND1
|
F:HIS80
|
2.1
|
27.9
|
1.0
|
|
CG
|
F:ASP83
|
2.7
|
28.9
|
1.0
|
|
OD2
|
F:ASP83
|
2.9
|
27.8
|
1.0
|
|
CE1
|
F:HIS71
|
2.9
|
29.9
|
1.0
|
|
CE1
|
F:HIS80
|
3.0
|
28.7
|
1.0
|
|
CE1
|
F:HIS63
|
3.1
|
30.3
|
1.0
|
|
CG
|
F:HIS63
|
3.1
|
30.5
|
1.0
|
|
CG
|
F:HIS71
|
3.2
|
29.1
|
1.0
|
|
CG
|
F:HIS80
|
3.2
|
28.4
|
1.0
|
|
CB
|
F:HIS63
|
3.4
|
30.4
|
1.0
|
|
CB
|
F:HIS80
|
3.6
|
28.4
|
1.0
|
|
CB
|
F:HIS71
|
3.6
|
29.6
|
1.0
|
|
O
|
F:LYS136
|
3.8
|
30.8
|
1.0
|
|
CA
|
F:HIS71
|
3.9
|
29.7
|
1.0
|
|
NE2
|
F:HIS71
|
4.1
|
28.2
|
1.0
|
|
NE2
|
F:HIS80
|
4.1
|
27.6
|
1.0
|
|
NE2
|
F:HIS63
|
4.2
|
30.9
|
1.0
|
|
CB
|
F:ASP83
|
4.2
|
29.0
|
1.0
|
|
CD2
|
F:HIS63
|
4.2
|
30.8
|
1.0
|
|
CD2
|
F:HIS71
|
4.2
|
28.3
|
1.0
|
|
CD2
|
F:HIS80
|
4.2
|
27.4
|
1.0
|
|
O
|
F:HOH759
|
4.7
|
23.5
|
1.0
|
|
N
|
F:HIS80
|
4.7
|
28.6
|
1.0
|
|
CA
|
F:ASP83
|
4.7
|
29.2
|
1.0
|
|
N
|
F:GLY72
|
4.7
|
29.2
|
1.0
|
|
CA
|
F:HIS80
|
4.8
|
28.7
|
1.0
|
|
C
|
F:LYS136
|
4.9
|
30.6
|
1.0
|
|
C
|
F:HIS71
|
4.9
|
29.7
|
1.0
|
|
N
|
F:ASP83
|
4.9
|
29.4
|
1.0
|
|
CA
|
F:HIS63
|
4.9
|
29.9
|
1.0
|
|
CD2
|
F:HIS46
|
4.9
|
30.6
|
1.0
|
|
N
|
F:HIS71
|
4.9
|
29.9
|
1.0
|
|
Zinc binding site 7 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 7 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn155
b:17.5
occ:0.99
|
OD1
|
G:ASP83
|
2.0
|
28.0
|
1.0
|
|
ND1
|
G:HIS71
|
2.1
|
28.7
|
1.0
|
|
ND1
|
G:HIS80
|
2.1
|
28.7
|
1.0
|
|
ND1
|
G:HIS63
|
2.1
|
29.3
|
1.0
|
|
CG
|
G:ASP83
|
2.7
|
29.0
|
1.0
|
|
OD2
|
G:ASP83
|
2.8
|
28.2
|
1.0
|
|
CE1
|
G:HIS71
|
2.9
|
30.7
|
1.0
|
|
CE1
|
G:HIS80
|
3.0
|
28.9
|
1.0
|
|
CG
|
G:HIS63
|
3.1
|
29.4
|
1.0
|
|
CE1
|
G:HIS63
|
3.1
|
29.9
|
1.0
|
|
CG
|
G:HIS80
|
3.1
|
28.4
|
1.0
|
|
CG
|
G:HIS71
|
3.2
|
29.5
|
1.0
|
|
CB
|
G:HIS63
|
3.4
|
29.6
|
1.0
|
|
CB
|
G:HIS80
|
3.6
|
28.5
|
1.0
|
|
CB
|
G:HIS71
|
3.6
|
29.4
|
1.0
|
|
O
|
G:LYS136
|
3.8
|
30.8
|
1.0
|
|
CA
|
G:HIS71
|
3.9
|
29.6
|
1.0
|
|
NE2
|
G:HIS80
|
4.1
|
27.6
|
1.0
|
|
NE2
|
G:HIS71
|
4.1
|
29.1
|
1.0
|
|
CB
|
G:ASP83
|
4.2
|
29.2
|
1.0
|
|
CD2
|
G:HIS80
|
4.2
|
27.8
|
1.0
|
|
NE2
|
G:HIS63
|
4.2
|
29.6
|
1.0
|
|
CD2
|
G:HIS63
|
4.2
|
29.6
|
1.0
|
|
CD2
|
G:HIS71
|
4.2
|
28.8
|
1.0
|
|
CA
|
G:ASP83
|
4.7
|
29.4
|
1.0
|
|
N
|
G:HIS80
|
4.7
|
28.8
|
1.0
|
|
O
|
G:HOH592
|
4.7
|
19.2
|
1.0
|
|
N
|
G:GLY72
|
4.7
|
29.0
|
1.0
|
|
CA
|
G:HIS80
|
4.8
|
28.7
|
1.0
|
|
C
|
G:LYS136
|
4.8
|
30.8
|
1.0
|
|
CD2
|
G:HIS46
|
4.9
|
30.6
|
1.0
|
|
C
|
G:HIS71
|
4.9
|
29.2
|
1.0
|
|
N
|
G:ASP83
|
4.9
|
29.5
|
1.0
|
|
CA
|
G:HIS63
|
4.9
|
29.5
|
1.0
|
|
N
|
G:HIS71
|
5.0
|
30.1
|
1.0
|
|
Zinc binding site 8 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 8 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn155
b:19.6
occ:0.94
|
OD1
|
H:ASP83
|
1.9
|
27.0
|
1.0
|
|
ND1
|
H:HIS80
|
2.1
|
29.7
|
1.0
|
|
ND1
|
H:HIS63
|
2.1
|
30.0
|
1.0
|
|
ND1
|
H:HIS71
|
2.1
|
29.2
|
1.0
|
|
CG
|
H:ASP83
|
2.7
|
29.6
|
1.0
|
|
CE1
|
H:HIS71
|
2.9
|
29.9
|
1.0
|
|
CE1
|
H:HIS80
|
2.9
|
29.9
|
1.0
|
|
OD2
|
H:ASP83
|
3.0
|
29.6
|
1.0
|
|
CG
|
H:HIS63
|
3.0
|
29.9
|
1.0
|
|
CE1
|
H:HIS63
|
3.1
|
29.9
|
1.0
|
|
CG
|
H:HIS80
|
3.1
|
29.5
|
1.0
|
|
CG
|
H:HIS71
|
3.2
|
29.5
|
1.0
|
|
CB
|
H:HIS63
|
3.3
|
29.9
|
1.0
|
|
CB
|
H:HIS80
|
3.6
|
29.4
|
1.0
|
|
CB
|
H:HIS71
|
3.6
|
30.0
|
1.0
|
|
O
|
H:LYS136
|
3.8
|
32.1
|
1.0
|
|
CA
|
H:HIS71
|
3.9
|
30.2
|
1.0
|
|
NE2
|
H:HIS80
|
4.0
|
29.7
|
1.0
|
|
NE2
|
H:HIS71
|
4.1
|
29.2
|
1.0
|
|
CD2
|
H:HIS80
|
4.2
|
30.0
|
1.0
|
|
CB
|
H:ASP83
|
4.2
|
29.3
|
1.0
|
|
NE2
|
H:HIS63
|
4.2
|
30.5
|
1.0
|
|
CD2
|
H:HIS63
|
4.2
|
30.7
|
1.0
|
|
CD2
|
H:HIS71
|
4.2
|
29.5
|
1.0
|
|
CA
|
H:ASP83
|
4.7
|
29.7
|
1.0
|
|
N
|
H:HIS80
|
4.7
|
29.3
|
1.0
|
|
CA
|
H:HIS80
|
4.7
|
29.5
|
1.0
|
|
O
|
H:HOH414
|
4.7
|
21.5
|
1.0
|
|
N
|
H:GLY72
|
4.7
|
30.0
|
1.0
|
|
C
|
H:LYS136
|
4.8
|
31.9
|
1.0
|
|
CA
|
H:HIS63
|
4.9
|
30.0
|
1.0
|
|
N
|
H:ASP83
|
4.9
|
29.5
|
1.0
|
|
N
|
H:HIS71
|
4.9
|
30.4
|
1.0
|
|
C
|
H:HIS71
|
4.9
|
29.9
|
1.0
|
|
CD2
|
H:HIS46
|
5.0
|
30.4
|
1.0
|
|
Zinc binding site 9 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 9 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn155
b:20.7
occ:0.95
|
OD1
|
I:ASP83
|
1.9
|
27.1
|
1.0
|
|
ND1
|
I:HIS80
|
2.1
|
27.8
|
1.0
|
|
ND1
|
I:HIS71
|
2.1
|
28.1
|
1.0
|
|
ND1
|
I:HIS63
|
2.1
|
29.2
|
1.0
|
|
CG
|
I:ASP83
|
2.7
|
28.8
|
1.0
|
|
OD2
|
I:ASP83
|
2.9
|
27.3
|
1.0
|
|
CE1
|
I:HIS80
|
2.9
|
28.4
|
1.0
|
|
CE1
|
I:HIS71
|
3.0
|
28.4
|
1.0
|
|
CG
|
I:HIS63
|
3.1
|
29.8
|
1.0
|
|
CG
|
I:HIS80
|
3.1
|
28.3
|
1.0
|
|
CE1
|
I:HIS63
|
3.1
|
29.7
|
1.0
|
|
CG
|
I:HIS71
|
3.2
|
28.5
|
1.0
|
|
CB
|
I:HIS63
|
3.3
|
29.6
|
1.0
|
|
CB
|
I:HIS80
|
3.6
|
28.2
|
1.0
|
|
CB
|
I:HIS71
|
3.6
|
28.4
|
1.0
|
|
O
|
I:LYS136
|
3.9
|
31.1
|
1.0
|
|
CA
|
I:HIS71
|
3.9
|
28.8
|
1.0
|
|
NE2
|
I:HIS80
|
4.0
|
27.0
|
1.0
|
|
CD2
|
I:HIS80
|
4.1
|
27.1
|
1.0
|
|
NE2
|
I:HIS71
|
4.2
|
27.8
|
1.0
|
|
CB
|
I:ASP83
|
4.2
|
28.9
|
1.0
|
|
CD2
|
I:HIS63
|
4.2
|
29.6
|
1.0
|
|
NE2
|
I:HIS63
|
4.2
|
29.5
|
1.0
|
|
CD2
|
I:HIS71
|
4.3
|
28.7
|
1.0
|
|
CA
|
I:ASP83
|
4.7
|
29.0
|
1.0
|
|
O
|
I:HOH263
|
4.7
|
28.9
|
1.0
|
|
N
|
I:HIS80
|
4.7
|
28.4
|
1.0
|
|
N
|
I:GLY72
|
4.7
|
28.0
|
1.0
|
|
CA
|
I:HIS80
|
4.8
|
28.4
|
1.0
|
|
CA
|
I:HIS63
|
4.9
|
29.5
|
1.0
|
|
N
|
I:ASP83
|
4.9
|
28.8
|
1.0
|
|
C
|
I:LYS136
|
4.9
|
31.2
|
1.0
|
|
C
|
I:HIS71
|
4.9
|
28.5
|
1.0
|
|
N
|
I:HIS71
|
4.9
|
29.0
|
1.0
|
|
CD2
|
I:HIS46
|
4.9
|
30.3
|
1.0
|
|
Zinc binding site 10 out
of 10 in 2gbv
Go back to
Zinc Binding Sites List in 2gbv
Zinc binding site 10 out
of 10 in the C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of C6A/C111A/C57A/C146A Holo Cuzn Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn155
b:22.2
occ:1.00
|
OD1
|
J:ASP83
|
1.9
|
28.4
|
1.0
|
|
ND1
|
J:HIS63
|
2.0
|
28.9
|
1.0
|
|
ND1
|
J:HIS71
|
2.0
|
30.2
|
1.0
|
|
ND1
|
J:HIS80
|
2.1
|
29.6
|
1.0
|
|
CG
|
J:ASP83
|
2.7
|
29.7
|
1.0
|
|
OD2
|
J:ASP83
|
2.8
|
29.2
|
1.0
|
|
CE1
|
J:HIS71
|
2.9
|
29.9
|
1.0
|
|
CE1
|
J:HIS80
|
2.9
|
29.7
|
1.0
|
|
CG
|
J:HIS63
|
3.0
|
29.0
|
1.0
|
|
CE1
|
J:HIS63
|
3.0
|
29.0
|
1.0
|
|
CG
|
J:HIS80
|
3.1
|
29.6
|
1.0
|
|
CG
|
J:HIS71
|
3.1
|
30.1
|
1.0
|
|
CB
|
J:HIS63
|
3.3
|
29.0
|
1.0
|
|
CB
|
J:HIS80
|
3.5
|
29.6
|
1.0
|
|
CB
|
J:HIS71
|
3.6
|
30.1
|
1.0
|
|
CA
|
J:HIS71
|
3.9
|
29.9
|
1.0
|
|
O
|
J:LYS136
|
4.0
|
30.9
|
1.0
|
|
NE2
|
J:HIS71
|
4.0
|
30.1
|
1.0
|
|
NE2
|
J:HIS80
|
4.1
|
29.8
|
1.0
|
|
NE2
|
J:HIS63
|
4.1
|
28.6
|
1.0
|
|
CD2
|
J:HIS63
|
4.1
|
29.1
|
1.0
|
|
CB
|
J:ASP83
|
4.1
|
29.6
|
1.0
|
|
CD2
|
J:HIS80
|
4.2
|
29.8
|
1.0
|
|
CD2
|
J:HIS71
|
4.2
|
29.7
|
1.0
|
|
O
|
J:HOH242
|
4.6
|
26.0
|
1.0
|
|
N
|
J:HIS80
|
4.6
|
29.6
|
1.0
|
|
CA
|
J:ASP83
|
4.7
|
29.8
|
1.0
|
|
CA
|
J:HIS80
|
4.7
|
29.7
|
1.0
|
|
N
|
J:GLY72
|
4.8
|
29.5
|
1.0
|
|
N
|
J:ASP83
|
4.8
|
29.8
|
1.0
|
|
CA
|
J:HIS63
|
4.9
|
28.9
|
1.0
|
|
CD2
|
J:HIS46
|
4.9
|
29.5
|
1.0
|
|
C
|
J:HIS71
|
4.9
|
29.8
|
1.0
|
|
C
|
J:LYS136
|
4.9
|
31.3
|
1.0
|
|
N
|
J:HIS71
|
4.9
|
30.4
|
1.0
|
|
Reference:
A.Hornberg,
D.T.Logan,
S.L.Marklund,
M.Oliveberg.
The Coupling Between Disulphide Status, Metallation and Dimer Interface Strength in Cu/Zn Superoxide Dismutase J.Mol.Biol. V. 365 333 2007.
ISSN: ISSN 0022-2836
PubMed: 17070542
DOI: 10.1016/J.JMB.2006.09.048
Page generated: Thu Oct 17 00:09:18 2024
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