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Zinc in PDB 2gb5: Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution

Enzymatic activity of Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution

All present enzymatic activity of Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution:
3.6.1.22;

Protein crystallography data

The structure of Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution, PDB code: 2gb5 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.61 / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 99.287, 103.553, 57.270, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 25.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution (pdb code 2gb5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution, PDB code: 2gb5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2gb5

Go back to Zinc Binding Sites List in 2gb5
Zinc binding site 1 out of 2 in the Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:44.5
occ:1.00
SG A:CYS101 2.3 37.2 1.0
SG A:CYS119 2.3 35.5 1.0
SG A:CYS116 2.4 45.6 1.0
SG A:CYS98 2.5 37.6 1.0
CB A:CYS98 3.1 33.1 1.0
CB A:CYS116 3.4 39.5 1.0
CB A:CYS119 3.4 43.0 1.0
CB A:CYS101 3.4 34.4 1.0
N A:CYS119 3.7 44.3 1.0
N A:CYS101 3.9 31.9 1.0
CA A:CYS119 4.1 42.7 1.0
CA A:CYS101 4.2 33.1 1.0
CA A:CYS98 4.5 33.7 1.0
CB A:TYR100 4.6 34.7 1.0
C A:CYS119 4.6 43.5 1.0
C A:CYS101 4.7 33.2 1.0
CB A:HIS118 4.8 44.9 1.0
CA A:CYS116 4.8 40.7 1.0
N A:GLY102 4.8 34.5 1.0
C A:HIS118 4.8 44.4 1.0
O A:CYS119 4.8 44.1 1.0
N A:HIS103 4.9 36.1 1.0
CB A:HIS103 4.9 36.8 1.0
N A:HIS118 5.0 45.3 1.0
C A:TYR100 5.0 33.1 1.0

Zinc binding site 2 out of 2 in 2gb5

Go back to Zinc Binding Sites List in 2gb5
Zinc binding site 2 out of 2 in the Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:43.5
occ:1.00
SG B:CYS119 2.2 44.0 1.0
SG B:CYS101 2.4 38.2 1.0
SG B:CYS116 2.4 41.1 1.0
SG B:CYS98 2.4 36.8 1.0
CB B:CYS98 3.0 34.5 1.0
CB B:CYS116 3.3 40.4 1.0
CB B:CYS119 3.4 43.6 1.0
CB B:CYS101 3.5 32.7 1.0
N B:CYS119 3.8 44.4 1.0
N B:CYS101 3.9 31.2 1.0
CA B:CYS119 4.1 43.7 1.0
CA B:CYS101 4.2 32.8 1.0
CB B:TYR100 4.4 32.6 1.0
CA B:CYS98 4.5 34.6 1.0
C B:CYS119 4.6 44.0 1.0
CA B:CYS116 4.7 40.6 1.0
N B:GLY102 4.7 31.4 1.0
C B:CYS101 4.8 33.0 1.0
O B:CYS119 4.8 44.7 1.0
C B:TYR100 4.8 30.6 1.0
CB B:HIS118 4.9 45.4 1.0
C B:HIS118 4.9 44.4 1.0
N B:HIS103 4.9 36.1 1.0
C B:CYS98 5.0 33.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
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