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Zinc in PDB 2gah: Heterotetrameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution

Protein crystallography data

The structure of Heterotetrameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution, PDB code: 2gah was solved by Z.W.Chen, A.Hassan-Abdulah, G.Zhao, M.S.Jorns, F.S.Mathews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.57 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.259, 132.772, 198.038, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Heterotetrameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution (pdb code 2gah). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Heterotetrameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution, PDB code: 2gah:

Zinc binding site 1 out of 1 in 2gah

Go back to Zinc Binding Sites List in 2gah
Zinc binding site 1 out of 1 in the Heterotetrameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heterotetrameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn101

b:19.6
occ:1.00
ND1 D:HIS59 2.1 16.9 1.0
SG D:CYS9 2.3 19.0 1.0
SG D:CYS63 2.3 19.9 1.0
SG D:CYS6 2.3 19.1 1.0
CE1 D:HIS59 3.1 18.1 1.0
CG D:HIS59 3.1 18.2 1.0
CB D:CYS9 3.2 18.9 1.0
CB D:CYS63 3.3 20.5 1.0
CB D:HIS59 3.4 15.9 1.0
CB D:CYS6 3.5 12.9 1.0
N D:CYS63 3.6 22.2 1.0
N D:CYS9 3.7 19.1 1.0
CA D:CYS63 4.0 20.6 1.0
CA D:CYS9 4.1 18.8 1.0
NE2 D:HIS59 4.2 22.1 1.0
CB D:ASN8 4.2 22.0 1.0
CD2 D:HIS59 4.2 17.1 1.0
C D:ASN8 4.5 19.4 1.0
C D:GLY62 4.7 21.9 1.0
CA D:ASN8 4.7 19.8 1.0
OD1 D:ASN8 4.8 23.8 1.0
N D:ASN8 4.8 20.8 1.0
O C:HOH1088 4.8 17.0 1.0
CA D:GLY62 4.8 20.5 1.0
CA D:CYS6 4.8 19.7 1.0
C D:CYS63 4.9 21.3 1.0
CA D:HIS59 4.9 16.9 1.0
CG D:ASN8 4.9 25.0 1.0
N D:ARG64 5.0 20.8 1.0

Reference:

Z.W.Chen, A.Hassan-Abdulah, G.Zhao, M.S.Jorns, F.S.Mathews. Heterotetrameric Sarcosine Oxidase: Structure of A Diflavin Metalloenzyme at 1.85 A Resolution. J.Mol.Biol. V. 360 1000 2006.
ISSN: ISSN 0022-2836
PubMed: 16820168
DOI: 10.1016/J.JMB.2006.05.067
Page generated: Thu Oct 17 00:08:19 2024

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