Atomistry » Zinc » PDB 2fnn-2g0d » 2fyv
Atomistry »
  Zinc »
    PDB 2fnn-2g0d »
      2fyv »

Zinc in PDB 2fyv: Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog

Enzymatic activity of Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog

All present enzymatic activity of Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog:
3.2.1.114;

Protein crystallography data

The structure of Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog, PDB code: 2fyv was solved by D.A.Kuntz, T.Hamlet, D.R.Rose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.806, 108.635, 137.384, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 21.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog (pdb code 2fyv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog, PDB code: 2fyv:

Zinc binding site 1 out of 1 in 2fyv

Go back to Zinc Binding Sites List in 2fyv
Zinc binding site 1 out of 1 in the Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Golgi Alpha-Mannosidase II Complex with An Amino-Salacinol Carboxylate Analog within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2003

b:10.8
occ:1.00
NE2 A:HIS90 2.1 6.0 1.0
NE2 A:HIS471 2.1 7.6 1.0
OD1 A:ASP92 2.1 9.0 1.0
O2 A:W722000 2.1 9.7 1.0
OD2 A:ASP204 2.2 4.9 1.0
CG A:ASP92 2.9 8.6 1.0
CD2 A:HIS471 3.0 3.8 1.0
CD2 A:HIS90 3.0 5.5 1.0
CE1 A:HIS90 3.0 4.0 1.0
OD2 A:ASP92 3.1 8.9 1.0
CG A:ASP204 3.1 7.5 1.0
CE1 A:HIS471 3.1 2.2 1.0
C2 A:W722000 3.3 10.7 1.0
CB A:ASP204 3.4 6.9 1.0
C3 A:W722000 3.5 14.2 1.0
OD2 A:ASP472 4.1 6.4 1.0
ND1 A:HIS90 4.2 3.9 1.0
CG A:HIS90 4.2 5.6 1.0
CG A:HIS471 4.2 5.9 1.0
ND1 A:HIS471 4.2 6.6 1.0
OD1 A:ASP204 4.3 6.4 1.0
C1 A:W722000 4.3 12.8 1.0
N4 A:W722000 4.3 15.6 1.0
NE2 A:HIS470 4.3 9.1 1.0
CB A:ASP92 4.3 7.5 1.0
O A:HOH2731 4.4 6.0 1.0
OH A:TYR269 4.8 10.4 1.0
CA A:ASP204 4.9 7.0 1.0
CA A:ASP92 4.9 5.7 1.0
C5 A:W722000 5.0 13.8 1.0

Reference:

W.Chen, D.A.Kuntz, T.Hamlet, L.Sim, D.R.Rose, B.Mario Pinto. Synthesis, Enzymatic Activity, and X-Ray Crystallography of An Unusual Class of Amino Acids. Bioorg.Med.Chem. V. 14 8332 2006.
ISSN: ISSN 0968-0896
PubMed: 17010621
DOI: 10.1016/J.BMC.2006.09.004
Page generated: Wed Dec 16 03:28:46 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy