Zinc in PDB 2fyg: Crystal Structure of NSP10 From Sars Coronavirus

The structure of Crystal Structure of NSP10 From Sars Coronavirus, PDB code: 2fyg was solved by J.S.Joseph, K.S.Saikatendu, V.Subramanian, B.W.Neuman, A.Brooun, M.Griffith, K.Moy, M.K.Yadav, J.Velasquez, M.J.Buchmeier, R.C.Stevens, P.Kuhn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.46 / 1.80
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	108.874, 108.874, 108.874, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 23.3

The binding sites of Zinc atom in the Crystal Structure of NSP10 From Sars Coronavirus (pdb code 2fyg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of NSP10 From Sars Coronavirus, PDB code: 2fyg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of NSP10 From Sars Coronavirus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of NSP10 From Sars Coronavirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:21.2 occ:1.00 NE2 A:HIS83 2.1 18.0 1.0 SG A:CYS74 2.3 19.6 1.0 SG A:CYS77 2.3 22.1 1.0 SG A:CYS90 2.3 23.6 1.0 CE1 A:HIS83 3.0 21.5 1.0 CD2 A:HIS83 3.1 21.3 1.0 CB A:CYS74 3.2 18.0 1.0 CB A:CYS90 3.3 26.4 1.0 CB A:CYS77 3.4 18.7 1.0 N A:CYS77 3.6 18.5 1.0 CA A:CYS77 4.0 18.0 1.0 ND1 A:HIS83 4.1 22.0 1.0 CG A:HIS83 4.2 21.9 1.0 O A:HOH401 4.5 39.7 1.0 CA A:CYS90 4.5 26.8 1.0 CB A:TYR76 4.5 18.4 1.0 C A:TYR76 4.5 17.9 1.0 CA A:CYS74 4.6 18.3 1.0 O A:HOH410 4.7 34.4 1.0 CB A:LYS93 4.8 26.0 1.0 CA A:TYR76 4.9 18.1 1.0 N A:TYR76 5.0 17.8 1.0 C A:CYS74 5.0 18.4 1.0 N A:LYS93 5.0 23.6 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of NSP10 From Sars Coronavirus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of NSP10 From Sars Coronavirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:36.4 occ:1.00 SG A:CYS117 2.1 36.1 1.0 SG A:CYS128 2.1 37.9 1.0 SG A:CYS120 2.4 30.2 1.0 SG A:CYS130 2.5 41.1 1.0 CB A:CYS117 3.0 34.7 1.0 CB A:CYS120 3.3 32.9 1.0 CB A:CYS128 3.4 39.3 1.0 CB A:CYS130 3.5 46.5 1.0 N A:CYS120 3.8 35.0 1.0 O A:HOH443 4.0 39.0 1.0 CA A:CYS128 4.1 39.4 1.0 CA A:CYS120 4.1 33.3 1.0 N A:CYS130 4.3 46.4 1.0 CA A:CYS117 4.5 34.6 1.0 CA A:CYS130 4.5 47.0 1.0 CB A:VAL119 4.7 38.0 1.0 N A:SER129 4.7 42.4 1.0 C A:CYS128 4.7 40.6 1.0 C A:VAL119 4.9 36.4 1.0 C A:CYS120 5.0 32.8 1.0

J.S.Joseph, K.S.Saikatendu, V.Subramanian, B.W.Neuman, A.Brooun, M.Griffith, K.Moy, M.K.Yadav, J.Velasquez, M.J.Buchmeier, R.C.Stevens, P.Kuhn. Crystal Structure of Nonstructural Protein 10 From the Severe Acute Respiratory Syndrome Coronavirus Reveals A Novel Fold with Two Zinc-Binding Motifs. J.Virol. V. 80 7894 2006.
ISSN: ISSN 0022-538X
PubMed: 16873246
DOI: 10.1128/JVI.00467-06