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Zinc in PDB 2fuu: uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide (pdb code 2fuu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide, PDB code: 2fuu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2fuu

Go back to Zinc Binding Sites List in 2fuu
Zinc binding site 1 out of 2 in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS56 1.2 16.7 1.0
SG A:CYS53 1.4 16.7 1.0
SG A:CYS29 1.5 16.7 1.0
SG A:CYS26 1.6 16.7 1.0
H A:CYS29 1.8 0.0 1.0
H A:CYS53 2.0 0.0 1.0
CB A:CYS56 2.4 16.7 1.0
HB2 A:CYS56 2.4 0.0 1.0
HG13 A:VAL52 2.5 0.0 1.0
H A:ARG28 2.5 0.0 1.0
N A:CYS29 2.6 16.7 1.0
CB A:CYS26 2.7 16.7 1.0
CB A:CYS53 2.8 16.7 1.0
HA A:CYS26 2.8 0.0 1.0
N A:CYS53 2.9 16.7 1.0
HG11 A:VAL52 2.9 0.0 1.0
HB3 A:CYS56 2.9 0.0 1.0
CA A:CYS26 3.0 16.7 1.0
CB A:CYS29 3.1 16.7 1.0
HB3 A:CYS26 3.1 0.0 1.0
CG1 A:VAL52 3.1 50.0 1.0
HB3 A:CYS53 3.2 0.0 1.0
HB3 A:ARG28 3.2 0.0 1.0
C A:CYS26 3.3 16.7 1.0
H A:CYS56 3.3 0.0 1.0
N A:ARG28 3.3 16.7 1.0
CA A:CYS53 3.3 16.7 1.0
H A:ASP27 3.3 0.0 1.0
CA A:CYS29 3.4 16.7 1.0
H A:GLN57 3.4 0.0 1.0
N A:ASP27 3.4 16.7 1.0
HB2 A:CYS26 3.6 0.0 1.0
C A:ARG28 3.6 16.7 1.0
CA A:CYS56 3.6 16.7 1.0
H A:GLN30 3.6 0.0 1.0
HB2 A:CYS53 3.6 0.0 1.0
O A:CYS53 3.6 16.7 1.0
HB3 A:CYS29 3.7 0.0 1.0
HG12 A:VAL52 3.7 0.0 1.0
HB2 A:CYS29 3.7 0.0 1.0
CA A:ARG28 3.8 16.7 1.0
C A:CYS53 3.8 16.7 1.0
N A:CYS56 3.8 16.7 1.0
CB A:ARG28 4.0 16.7 1.0
O A:CYS26 4.0 16.7 1.0
N A:GLN57 4.0 16.7 1.0
HA A:VAL52 4.0 0.0 1.0
C A:VAL52 4.0 16.7 1.0
HG2 A:ARG28 4.1 0.0 1.0
HA A:CYS29 4.2 0.0 1.0
C A:CYS56 4.2 16.7 1.0
HA A:CYS53 4.3 0.0 1.0
C A:ASP27 4.3 16.7 1.0
N A:GLN30 4.4 16.7 1.0
CA A:VAL52 4.4 16.7 1.0
CB A:VAL52 4.4 50.0 1.0
N A:CYS26 4.4 16.7 1.0
C A:CYS29 4.4 16.7 1.0
HA A:CYS56 4.4 0.0 1.0
CA A:ASP27 4.4 16.7 1.0
OH A:TYR33 4.5 50.0 1.0
CG A:ARG28 4.6 16.7 1.0
HB2 A:GLN57 4.7 0.0 1.0
H A:ASN31 4.7 0.0 1.0
O A:ARG28 4.7 16.7 1.0
HB3 A:ASP27 4.7 0.0 1.0
HD2 A:ARG28 4.8 0.0 1.0
HH A:TYR33 4.8 0.0 1.0
HA A:ARG28 4.9 0.0 1.0
H A:CYS26 4.9 0.0 1.0
HB2 A:ARG28 4.9 0.0 1.0
HB A:VAL52 4.9 0.0 1.0
N A:PRO54 4.9 16.7 1.0
H A:GLN55 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2fuu

Go back to Zinc Binding Sites List in 2fuu
Zinc binding site 2 out of 2 in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:0.0
occ:1.00
SG A:CYS37 1.3 16.7 1.0
SG A:CYS13 1.4 16.7 1.0
SG A:CYS11 1.6 16.7 1.0
CB A:CYS37 2.4 16.7 1.0
HB2 A:CYS37 2.5 0.0 1.0
CB A:CYS13 2.5 16.7 1.0
ND1 A:HIS34 2.6 16.7 1.0
HB2 A:CYS13 2.6 0.0 1.0
CE1 A:HIS34 2.7 16.7 1.0
CB A:CYS11 2.7 16.7 1.0
HE1 A:HIS34 2.9 0.0 1.0
HA A:CYS37 2.9 0.0 1.0
HB2 A:CYS11 2.9 0.0 1.0
HB3 A:CYS11 3.0 0.0 1.0
HB3 A:CYS13 3.1 0.0 1.0
H A:HIS34 3.1 0.0 1.0
CA A:CYS37 3.2 16.7 1.0
H A:CYS13 3.2 0.0 1.0
HB3 A:CYS37 3.2 0.0 1.0
CG A:HIS34 3.3 16.7 1.0
NE2 A:HIS34 3.5 16.7 1.0
CA A:CYS13 3.8 16.7 1.0
CD2 A:HIS34 3.8 16.7 1.0
N A:CYS13 3.9 16.7 1.0
HB2 A:HIS34 3.9 0.0 1.0
HB3 A:TYR33 4.0 0.0 1.0
CA A:CYS11 4.1 16.7 1.0
N A:HIS34 4.1 16.7 1.0
HE2 A:HIS34 4.1 0.0 1.0
CB A:HIS34 4.1 16.7 1.0
C A:CYS37 4.2 16.7 1.0
N A:CYS37 4.2 16.7 1.0
HA A:CYS11 4.2 0.0 1.0
OG1 A:THR15 4.3 50.0 1.0
HZ2 A:LYS21 4.3 0.0 1.0
H A:CYS37 4.4 0.0 1.0
O A:CYS37 4.4 16.7 1.0
HB A:THR15 4.4 0.0 1.0
C A:CYS13 4.4 16.7 1.0
C A:CYS11 4.4 16.7 1.0
HG12 A:ILE12 4.5 0.0 1.0
HA A:CYS13 4.6 0.0 1.0
O A:CYS13 4.6 16.7 1.0
HD2 A:HIS34 4.6 0.0 1.0
H A:ILE12 4.7 0.0 1.0
CA A:HIS34 4.7 16.7 1.0
N A:ILE12 4.7 16.7 1.0
HA A:TYR33 4.7 0.0 1.0
HE3 A:LYS21 4.8 0.0 1.0
CB A:TYR33 4.9 16.7 1.0
O A:HIS34 4.9 16.7 1.0
NZ A:LYS21 4.9 50.0 1.0
CB A:THR15 4.9 50.0 1.0
O A:CYS11 4.9 16.7 1.0
HB2 A:TYR33 5.0 0.0 1.0

Reference:

H.Li, S.Ilin, W.Wang, E.M.Duncan, J.Wysocka, C.D.Allis, D.J.Patel. Molecular Basis For Site-Specific Read-Out of Histone H3K4ME3 By the Bptf Phd Finger of Nurf. Nature V. 442 91 2006.
ISSN: ISSN 0028-0836
PubMed: 16728978
DOI: 10.1038/NATURE04802
Page generated: Wed Dec 16 03:28:40 2020

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