Zinc in PDB 2fuu: uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide

The binding sites of Zinc atom in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide (pdb code 2fuu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide, PDB code: 2fuu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS56 1.2 16.7 1.0 SG A:CYS53 1.4 16.7 1.0 SG A:CYS29 1.5 16.7 1.0 SG A:CYS26 1.6 16.7 1.0 H A:CYS29 1.8 0.0 1.0 H A:CYS53 2.0 0.0 1.0 CB A:CYS56 2.4 16.7 1.0 HB2 A:CYS56 2.4 0.0 1.0 HG13 A:VAL52 2.5 0.0 1.0 H A:ARG28 2.5 0.0 1.0 N A:CYS29 2.6 16.7 1.0 CB A:CYS26 2.7 16.7 1.0 CB A:CYS53 2.8 16.7 1.0 HA A:CYS26 2.8 0.0 1.0 N A:CYS53 2.9 16.7 1.0 HG11 A:VAL52 2.9 0.0 1.0 HB3 A:CYS56 2.9 0.0 1.0 CA A:CYS26 3.0 16.7 1.0 CB A:CYS29 3.1 16.7 1.0 HB3 A:CYS26 3.1 0.0 1.0 CG1 A:VAL52 3.1 50.0 1.0 HB3 A:CYS53 3.2 0.0 1.0 HB3 A:ARG28 3.2 0.0 1.0 C A:CYS26 3.3 16.7 1.0 H A:CYS56 3.3 0.0 1.0 N A:ARG28 3.3 16.7 1.0 CA A:CYS53 3.3 16.7 1.0 H A:ASP27 3.3 0.0 1.0 CA A:CYS29 3.4 16.7 1.0 H A:GLN57 3.4 0.0 1.0 N A:ASP27 3.4 16.7 1.0 HB2 A:CYS26 3.6 0.0 1.0 C A:ARG28 3.6 16.7 1.0 CA A:CYS56 3.6 16.7 1.0 H A:GLN30 3.6 0.0 1.0 HB2 A:CYS53 3.6 0.0 1.0 O A:CYS53 3.6 16.7 1.0 HB3 A:CYS29 3.7 0.0 1.0 HG12 A:VAL52 3.7 0.0 1.0 HB2 A:CYS29 3.7 0.0 1.0 CA A:ARG28 3.8 16.7 1.0 C A:CYS53 3.8 16.7 1.0 N A:CYS56 3.8 16.7 1.0 CB A:ARG28 4.0 16.7 1.0 O A:CYS26 4.0 16.7 1.0 N A:GLN57 4.0 16.7 1.0 HA A:VAL52 4.0 0.0 1.0 C A:VAL52 4.0 16.7 1.0 HG2 A:ARG28 4.1 0.0 1.0 HA A:CYS29 4.2 0.0 1.0 C A:CYS56 4.2 16.7 1.0 HA A:CYS53 4.3 0.0 1.0 C A:ASP27 4.3 16.7 1.0 N A:GLN30 4.4 16.7 1.0 CA A:VAL52 4.4 16.7 1.0 CB A:VAL52 4.4 50.0 1.0 N A:CYS26 4.4 16.7 1.0 C A:CYS29 4.4 16.7 1.0 HA A:CYS56 4.4 0.0 1.0 CA A:ASP27 4.4 16.7 1.0 OH A:TYR33 4.5 50.0 1.0 CG A:ARG28 4.6 16.7 1.0 HB2 A:GLN57 4.7 0.0 1.0 H A:ASN31 4.7 0.0 1.0 O A:ARG28 4.7 16.7 1.0 HB3 A:ASP27 4.7 0.0 1.0 HD2 A:ARG28 4.8 0.0 1.0 HH A:TYR33 4.8 0.0 1.0 HA A:ARG28 4.9 0.0 1.0 H A:CYS26 4.9 0.0 1.0 HB2 A:ARG28 4.9 0.0 1.0 HB A:VAL52 4.9 0.0 1.0 N A:PRO54 4.9 16.7 1.0 H A:GLN55 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Solution Structure of the Phd Domain From the Human Bptf in Complex with H3(1-15)K4ME3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.0 occ:1.00 SG A:CYS37 1.3 16.7 1.0 SG A:CYS13 1.4 16.7 1.0 SG A:CYS11 1.6 16.7 1.0 CB A:CYS37 2.4 16.7 1.0 HB2 A:CYS37 2.5 0.0 1.0 CB A:CYS13 2.5 16.7 1.0 ND1 A:HIS34 2.6 16.7 1.0 HB2 A:CYS13 2.6 0.0 1.0 CE1 A:HIS34 2.7 16.7 1.0 CB A:CYS11 2.7 16.7 1.0 HE1 A:HIS34 2.9 0.0 1.0 HA A:CYS37 2.9 0.0 1.0 HB2 A:CYS11 2.9 0.0 1.0 HB3 A:CYS11 3.0 0.0 1.0 HB3 A:CYS13 3.1 0.0 1.0 H A:HIS34 3.1 0.0 1.0 CA A:CYS37 3.2 16.7 1.0 H A:CYS13 3.2 0.0 1.0 HB3 A:CYS37 3.2 0.0 1.0 CG A:HIS34 3.3 16.7 1.0 NE2 A:HIS34 3.5 16.7 1.0 CA A:CYS13 3.8 16.7 1.0 CD2 A:HIS34 3.8 16.7 1.0 N A:CYS13 3.9 16.7 1.0 HB2 A:HIS34 3.9 0.0 1.0 HB3 A:TYR33 4.0 0.0 1.0 CA A:CYS11 4.1 16.7 1.0 N A:HIS34 4.1 16.7 1.0 HE2 A:HIS34 4.1 0.0 1.0 CB A:HIS34 4.1 16.7 1.0 C A:CYS37 4.2 16.7 1.0 N A:CYS37 4.2 16.7 1.0 HA A:CYS11 4.2 0.0 1.0 OG1 A:THR15 4.3 50.0 1.0 HZ2 A:LYS21 4.3 0.0 1.0 H A:CYS37 4.4 0.0 1.0 O A:CYS37 4.4 16.7 1.0 HB A:THR15 4.4 0.0 1.0 C A:CYS13 4.4 16.7 1.0 C A:CYS11 4.4 16.7 1.0 HG12 A:ILE12 4.5 0.0 1.0 HA A:CYS13 4.6 0.0 1.0 O A:CYS13 4.6 16.7 1.0 HD2 A:HIS34 4.6 0.0 1.0 H A:ILE12 4.7 0.0 1.0 CA A:HIS34 4.7 16.7 1.0 N A:ILE12 4.7 16.7 1.0 HA A:TYR33 4.7 0.0 1.0 HE3 A:LYS21 4.8 0.0 1.0 CB A:TYR33 4.9 16.7 1.0 O A:HIS34 4.9 16.7 1.0 NZ A:LYS21 4.9 50.0 1.0 CB A:THR15 4.9 50.0 1.0 O A:CYS11 4.9 16.7 1.0 HB2 A:TYR33 5.0 0.0 1.0

H.Li, S.Ilin, W.Wang, E.M.Duncan, J.Wysocka, C.D.Allis, D.J.Patel. Molecular Basis For Site-Specific Read-Out of Histone H3K4ME3 By the Bptf Phd Finger of Nurf. Nature V. 442 91 2006.
ISSN: ISSN 0028-0836
PubMed: 16728978
DOI: 10.1038/NATURE04802